Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NB647_RS03095 Genome accession   NZ_CP098252
Coordinates   650399..650869 (+) Length   156 a.a.
NCBI ID   WP_269265099.1    Uniprot ID   A0A9E9LBR3
Organism   Oxalobacter aliiformigenes strain Va3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 645399..655869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB647_RS03090 (NB647_03080) uvrA 647278..650151 (-) 2874 WP_269284110.1 excinuclease ABC subunit UvrA -
  NB647_RS03095 (NB647_03085) ssb 650399..650869 (+) 471 WP_269265099.1 single-stranded DNA-binding protein Machinery gene
  NB647_RS03100 (NB647_03090) - 651334..652545 (-) 1212 WP_269284112.1 MFS transporter -
  NB647_RS03105 (NB647_03095) - 652913..653860 (+) 948 WP_269265101.1 ZIP family metal transporter -
  NB647_RS03110 (NB647_03100) - 654000..655454 (+) 1455 WP_269284114.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17287.20 Da        Isoelectric Point: 7.0176

>NTDB_id=694735 NB647_RS03095 WP_269265099.1 650399..650869(+) (ssb) [Oxalobacter aliiformigenes strain Va3]
MASINKVIIVGNLGRDPENRYLPSGEQVTSIAVATTDRWRDKATGEQKEATEWHRISFFGKLAEIAGQYLKKGSQVYIEG
RLRTRKYTDKEGIDRYATEIIADTMQMLGSRQGAGDPSDDRGSYQPPSRPAQGGGQRQQGSRPPSLSPDLDDDIPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=694735 NB647_RS03095 WP_269265099.1 650399..650869(+) (ssb) [Oxalobacter aliiformigenes strain Va3]
ATGGCATCGATCAACAAGGTCATCATCGTCGGCAATCTCGGCCGCGATCCGGAAAACCGATATCTGCCGAGCGGCGAACA
GGTTACCAGTATTGCGGTAGCCACGACTGATCGCTGGCGTGACAAGGCTACTGGCGAGCAGAAGGAAGCGACCGAATGGC
ACCGGATTTCCTTTTTCGGCAAACTGGCTGAAATTGCCGGACAGTATCTGAAAAAAGGGTCGCAGGTTTATATTGAAGGA
CGTCTGAGGACACGCAAGTATACGGACAAGGAAGGGATCGACCGGTATGCGACCGAAATTATCGCCGATACCATGCAGAT
GCTGGGCAGCCGTCAGGGAGCAGGTGATCCTTCTGATGACCGGGGAAGTTACCAGCCTCCGTCCCGTCCGGCGCAAGGTG
GTGGCCAGCGCCAGCAGGGAAGTCGTCCGCCTAGCCTGTCGCCGGATCTGGATGACGATATTCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.542

100

0.596
  ssb Glaesserella parasuis strain SC1401

48.333

100

0.558
  ssb Neisseria gonorrhoeae MS11

46.552

100

0.519
  ssb Neisseria meningitidis MC58

46.552

100

0.519