Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NB645_RS02385 Genome accession   NZ_CP098248
Coordinates   502679..503149 (+) Length   156 a.a.
NCBI ID   WP_269265099.1    Uniprot ID   A0A9E9LBR3
Organism   Oxalobacter aliiformigenes strain HOxNP-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 497679..508149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB645_RS02380 (NB645_02375) uvrA 499558..502431 (-) 2874 WP_269265098.1 excinuclease ABC subunit UvrA -
  NB645_RS02385 (NB645_02380) ssb 502679..503149 (+) 471 WP_269265099.1 single-stranded DNA-binding protein Machinery gene
  NB645_RS02390 (NB645_02385) - 503614..504825 (-) 1212 WP_269265100.1 MFS transporter -
  NB645_RS02395 (NB645_02390) - 505193..506140 (+) 948 WP_269265101.1 ZIP family metal transporter -
  NB645_RS02400 (NB645_02395) - 506280..507734 (+) 1455 WP_269265102.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17287.20 Da        Isoelectric Point: 7.0176

>NTDB_id=694684 NB645_RS02385 WP_269265099.1 502679..503149(+) (ssb) [Oxalobacter aliiformigenes strain HOxNP-1]
MASINKVIIVGNLGRDPENRYLPSGEQVTSIAVATTDRWRDKATGEQKEATEWHRISFFGKLAEIAGQYLKKGSQVYIEG
RLRTRKYTDKEGIDRYATEIIADTMQMLGSRQGAGDPSDDRGSYQPPSRPAQGGGQRQQGSRPPSLSPDLDDDIPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=694684 NB645_RS02385 WP_269265099.1 502679..503149(+) (ssb) [Oxalobacter aliiformigenes strain HOxNP-1]
ATGGCATCGATCAACAAGGTCATCATCGTCGGCAATCTCGGCCGCGATCCGGAAAACCGATATCTGCCGAGCGGCGAACA
GGTTACCAGTATTGCGGTAGCCACGACTGATCGCTGGCGTGACAAGGCTACTGGCGAGCAGAAGGAAGCGACCGAATGGC
ACCGGATTTCCTTTTTCGGCAAACTGGCTGAAATTGCCGGACAGTATCTGAAAAAAGGGTCGCAGGTTTATATTGAAGGA
CGTCTGAGGACACGCAAGTATACGGACAAGGAAGGGATCGACCGGTATGCGACCGAAATTATCGCCGATACCATGCAGAT
GCTGGGCAGCCGTCAGGGGGCAGGTGATCCTTCTGATGACCGGGGAAGTTACCAGCCTCCGTCCCGTCCGGCGCAAGGTG
GAGGCCAGCGCCAGCAGGGAAGTCGTCCGCCTAGCCTGTCGCCAGATCTGGATGACGATATTCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.542

100

0.596
  ssb Glaesserella parasuis strain SC1401

48.333

100

0.558
  ssb Neisseria gonorrhoeae MS11

46.552

100

0.519
  ssb Neisseria meningitidis MC58

46.552

100

0.519