Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NB636_RS07435 Genome accession   NZ_CP098247
Coordinates   1558398..1558868 (-) Length   156 a.a.
NCBI ID   WP_269277262.1    Uniprot ID   -
Organism   Oxalobacter aliiformigenes strain BA2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1553398..1563868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB636_RS07420 (NB636_07385) - 1553820..1555274 (-) 1455 WP_269277255.1 Ppx/GppA phosphatase family protein -
  NB636_RS07425 (NB636_07390) - 1555414..1556361 (-) 948 WP_269277257.1 ZIP family metal transporter -
  NB636_RS07430 (NB636_07395) - 1556722..1557933 (+) 1212 WP_269277260.1 MFS transporter -
  NB636_RS07435 (NB636_07400) ssb 1558398..1558868 (-) 471 WP_269277262.1 single-stranded DNA-binding protein Machinery gene
  NB636_RS07440 (NB636_07405) uvrA 1559116..1561989 (+) 2874 WP_269277432.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17257.17 Da        Isoelectric Point: 7.0176

>NTDB_id=694670 NB636_RS07435 WP_269277262.1 1558398..1558868(-) (ssb) [Oxalobacter aliiformigenes strain BA2]
MASINKVIIVGNLGRDPENRYLPSGEQVTSIAVATTDRWRDKATGEQKEATEWHRISFFGKLAEIAGQYLKKGSQVYIEG
RLRTRKYTDKEGIDRYATEIIADTMQMLGSRQGAGDPSDDRGSYQPPSRPAQGGGQRQQGSRPPGLSPDLDDDIPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=694670 NB636_RS07435 WP_269277262.1 1558398..1558868(-) (ssb) [Oxalobacter aliiformigenes strain BA2]
ATGGCATCGATCAACAAGGTCATCATCGTCGGCAATCTCGGCCGCGATCCGGAAAACCGATATCTGCCGAGCGGCGAACA
GGTTACCAGTATTGCGGTAGCCACGACTGATCGCTGGCGTGACAAGGCTACTGGCGAGCAGAAGGAAGCGACTGAATGGC
ACCGGATTTCCTTTTTCGGCAAACTGGCTGAAATCGCCGGACAGTATCTGAAAAAAGGGTCGCAGGTTTATATTGAAGGA
CGTCTGAGGACACGCAAGTATACGGACAAGGAAGGGATCGACCGGTATGCGACCGAAATTATCGCCGATACCATGCAGAT
GCTGGGCAGCCGTCAGGGAGCAGGCGATCCTTCTGATGACCGGGGAAGCTACCAGCCTCCGTCCCGTCCGGCGCAAGGTG
GTGGCCAGCGCCAGCAGGGAAGTCGTCCGCCTGGCCTGTCGCCGGATCTGGATGACGATATTCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.542

100

0.596
  ssb Glaesserella parasuis strain SC1401

48.333

100

0.558
  ssb Neisseria gonorrhoeae MS11

46.552

100

0.519
  ssb Neisseria meningitidis MC58

46.552

100

0.519