Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | NB636_RS01910 | Genome accession | NZ_CP098247 |
| Coordinates | 408156..408623 (-) | Length | 155 a.a. |
| NCBI ID | WP_269281001.1 | Uniprot ID | - |
| Organism | Oxalobacter aliiformigenes strain BA2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 406912..455607 | 408156..408623 | within | 0 |
Gene organization within MGE regions
Location: 406912..455607
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NB636_RS01905 (NB636_01900) | - | 406912..407958 (-) | 1047 | WP_269281003.1 | tyrosine-type recombinase/integrase | - |
| NB636_RS11755 | - | 407856..408152 (-) | 297 | WP_416143560.1 | helix-turn-helix domain-containing protein | - |
| NB636_RS01910 (NB636_01905) | ssb | 408156..408623 (-) | 468 | WP_269281001.1 | single-stranded DNA-binding protein | Machinery gene |
| NB636_RS01915 (NB636_01910) | - | 408696..408989 (+) | 294 | WP_269280998.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| NB636_RS01920 (NB636_01915) | - | 408993..409277 (+) | 285 | WP_269280996.1 | addiction module antidote protein | - |
| NB636_RS01925 (NB636_01920) | - | 409514..410557 (-) | 1044 | WP_269280993.1 | recombinase RecT | - |
| NB636_RS01930 (NB636_01925) | - | 410568..411470 (-) | 903 | WP_269280991.1 | YqaJ viral recombinase family protein | - |
| NB636_RS01935 (NB636_01930) | - | 411470..411637 (-) | 168 | WP_269280988.1 | hypothetical protein | - |
| NB636_RS01940 (NB636_01935) | - | 411707..412063 (-) | 357 | WP_269280985.1 | hypothetical protein | - |
| NB636_RS01945 (NB636_01940) | - | 412270..412569 (+) | 300 | WP_269280982.1 | ADP-ribosyl-(dinitrogen reductase) hydrolase | - |
| NB636_RS01950 (NB636_01945) | - | 412562..412882 (+) | 321 | WP_269280979.1 | hypothetical protein | - |
| NB636_RS01955 (NB636_01950) | - | 413268..413918 (-) | 651 | WP_269280978.1 | XRE family transcriptional regulator | - |
| NB636_RS01960 (NB636_01955) | - | 414018..414224 (+) | 207 | WP_269280975.1 | helix-turn-helix domain-containing protein | - |
| NB636_RS01965 (NB636_01960) | - | 414234..414761 (+) | 528 | WP_269280972.1 | hypothetical protein | - |
| NB636_RS01970 (NB636_01965) | - | 414758..415873 (+) | 1116 | WP_269280970.1 | YdaU family protein | - |
| NB636_RS01975 (NB636_01970) | - | 415870..416169 (+) | 300 | WP_269280967.1 | hypothetical protein | - |
| NB636_RS01980 (NB636_01975) | - | 416157..416582 (+) | 426 | WP_269280964.1 | RusA family crossover junction endodeoxyribonuclease | - |
| NB636_RS01985 (NB636_01980) | - | 416576..417064 (+) | 489 | WP_269280961.1 | terminase small subunit | - |
| NB636_RS01990 (NB636_01985) | - | 417040..418428 (+) | 1389 | WP_269280958.1 | terminase large subunit domain-containing protein | - |
| NB636_RS01995 (NB636_01990) | - | 418432..420345 (+) | 1914 | WP_269280956.1 | hypothetical protein | - |
| NB636_RS02000 (NB636_01995) | - | 420354..421373 (+) | 1020 | WP_269280953.1 | hypothetical protein | - |
| NB636_RS02005 (NB636_02000) | - | 421467..421751 (-) | 285 | WP_269280950.1 | helix-turn-helix domain-containing protein | - |
| NB636_RS02010 (NB636_02005) | - | 421732..422076 (-) | 345 | WP_269280948.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| NB636_RS02015 (NB636_02010) | - | 422118..422375 (+) | 258 | WP_269280947.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| NB636_RS02020 (NB636_02015) | - | 422441..428266 (-) | 5826 | WP_269295639.1 | LPD38 domain-containing protein | - |
| NB636_RS02025 (NB636_02020) | - | 428260..433305 (-) | 5046 | WP_269295640.1 | strawberry notch-like NTP hydrolase domain-containing protein | - |
| NB636_RS02030 (NB636_02025) | - | 433312..434148 (-) | 837 | WP_269280941.1 | hypothetical protein | - |
| NB636_RS02035 (NB636_02030) | - | 434150..434896 (-) | 747 | WP_269280938.1 | hypothetical protein | - |
| NB636_RS02040 (NB636_02035) | - | 434899..435831 (-) | 933 | WP_269280936.1 | hypothetical protein | - |
| NB636_RS02045 (NB636_02040) | - | 435828..436241 (-) | 414 | WP_269280933.1 | hypothetical protein | - |
| NB636_RS02050 (NB636_02045) | - | 436238..437674 (-) | 1437 | WP_269280931.1 | hypothetical protein | - |
| NB636_RS02055 (NB636_02050) | - | 437678..438391 (-) | 714 | WP_269280928.1 | hypothetical protein | - |
| NB636_RS02060 (NB636_02055) | - | 438625..439674 (+) | 1050 | WP_269280925.1 | phage major capsid protein | - |
| NB636_RS02065 (NB636_02060) | - | 439697..440002 (+) | 306 | WP_269280923.1 | hypothetical protein | - |
| NB636_RS02070 (NB636_02065) | - | 439980..441698 (+) | 1719 | WP_269280920.1 | hypothetical protein | - |
| NB636_RS02075 (NB636_02070) | - | 441695..442294 (+) | 600 | WP_269295641.1 | DUF4376 domain-containing protein | - |
| NB636_RS02080 (NB636_02075) | - | 442520..442789 (+) | 270 | WP_269281307.1 | hypothetical protein | - |
| NB636_RS02085 (NB636_02080) | - | 442786..443244 (+) | 459 | WP_269281308.1 | lysozyme | - |
| NB636_RS02090 (NB636_02085) | - | 443475..443819 (+) | 345 | WP_269281310.1 | hypothetical protein | - |
| NB636_RS02095 (NB636_02090) | - | 443822..444613 (+) | 792 | WP_269281312.1 | Rha family transcriptional regulator | - |
| NB636_RS02100 (NB636_02095) | - | 444905..445162 (+) | 258 | WP_269281313.1 | hypothetical protein | - |
| NB636_RS02105 (NB636_02100) | - | 445508..446386 (+) | 879 | WP_269281315.1 | hypothetical protein | - |
| NB636_RS02110 (NB636_02105) | - | 446534..446863 (+) | 330 | WP_269281316.1 | hypothetical protein | - |
| NB636_RS02115 (NB636_02110) | - | 447062..447598 (-) | 537 | WP_269281318.1 | hypothetical protein | - |
| NB636_RS02120 (NB636_02115) | - | 447651..448553 (-) | 903 | WP_269281320.1 | BRO family protein | - |
| NB636_RS02125 (NB636_02120) | - | 449366..449713 (-) | 348 | WP_269281322.1 | hypothetical protein | - |
| NB636_RS02130 (NB636_02125) | - | 450780..451316 (+) | 537 | WP_269281323.1 | hypothetical protein | - |
| NB636_RS02135 (NB636_02130) | - | 451579..452199 (-) | 621 | WP_269281325.1 | SAM-dependent methyltransferase | - |
| NB636_RS02140 (NB636_02135) | - | 452244..453653 (-) | 1410 | WP_269281327.1 | APC family permease | - |
| NB636_RS02145 (NB636_02140) | - | 454023..454457 (+) | 435 | WP_269281329.1 | DsbC family protein | - |
| NB636_RS11760 | - | 454505..454822 (-) | 318 | WP_407946888.1 | SDR family oxidoreductase | - |
| NB636_RS02150 (NB636_02145) | - | 454713..455033 (+) | 321 | WP_269281330.1 | hypothetical protein | - |
| NB636_RS02155 (NB636_02150) | - | 455299..455607 (-) | 309 | WP_269264099.1 | DUF1540 domain-containing protein | - |
Sequence
Protein
Download Length: 155 a.a. Molecular weight: 17118.92 Da Isoelectric Point: 9.2364
>NTDB_id=694668 NB636_RS01910 WP_269281001.1 408156..408623(-) (ssb) [Oxalobacter aliiformigenes strain BA2]
MASVNKVTIIGNLGRDPENRYLPGGEQVTSISVATTENWTDKQSGEKKSLTEWHRISFFGKLAEIAGQYLKKGSPVYVEG
KLRTQKYTDRDGIERYQTNIIASTMQMLGSKQDSGNSGQNGSQNNGRNSYSEAKQTGRRPAPPPAQSDMDDDIPF
MASVNKVTIIGNLGRDPENRYLPGGEQVTSISVATTENWTDKQSGEKKSLTEWHRISFFGKLAEIAGQYLKKGSPVYVEG
KLRTQKYTDRDGIERYQTNIIASTMQMLGSKQDSGNSGQNGSQNNGRNSYSEAKQTGRRPAPPPAQSDMDDDIPF
Nucleotide
Download Length: 468 bp
>NTDB_id=694668 NB636_RS01910 WP_269281001.1 408156..408623(-) (ssb) [Oxalobacter aliiformigenes strain BA2]
ATGGCATCAGTGAATAAAGTCACTATTATTGGAAATTTGGGCCGCGATCCGGAAAACCGGTATTTGCCGGGTGGCGAACA
GGTTACCAGTATTTCGGTAGCCACGACGGAGAACTGGACAGACAAACAGTCCGGTGAGAAAAAATCTCTGACCGAATGGC
ACCGGATTTCCTTTTTCGGCAAACTCGCTGAAATCGCCGGACAGTATCTGAAAAAGGGATCACCGGTCTATGTCGAGGGA
AAACTCCGGACGCAAAAATATACCGACCGTGACGGCATCGAGCGCTACCAGACCAACATCATCGCCAGTACGATGCAAAT
GCTCGGCAGCAAACAGGATAGCGGAAACAGTGGACAGAACGGCAGCCAAAATAATGGACGCAACAGCTACTCCGAAGCCA
AACAGACCGGCAGACGACCGGCACCTCCACCAGCGCAGTCTGATATGGATGATGACATTCCTTTTTGA
ATGGCATCAGTGAATAAAGTCACTATTATTGGAAATTTGGGCCGCGATCCGGAAAACCGGTATTTGCCGGGTGGCGAACA
GGTTACCAGTATTTCGGTAGCCACGACGGAGAACTGGACAGACAAACAGTCCGGTGAGAAAAAATCTCTGACCGAATGGC
ACCGGATTTCCTTTTTCGGCAAACTCGCTGAAATCGCCGGACAGTATCTGAAAAAGGGATCACCGGTCTATGTCGAGGGA
AAACTCCGGACGCAAAAATATACCGACCGTGACGGCATCGAGCGCTACCAGACCAACATCATCGCCAGTACGATGCAAAT
GCTCGGCAGCAAACAGGATAGCGGAAACAGTGGACAGAACGGCAGCCAAAATAATGGACGCAACAGCTACTCCGAAGCCA
AACAGACCGGCAGACGACCGGCACCTCCACCAGCGCAGTCTGATATGGATGATGACATTCCTTTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
45 |
100 |
0.523 |
| ssb | Vibrio cholerae strain A1552 |
44.134 |
100 |
0.51 |
| ssb | Neisseria gonorrhoeae MS11 |
44.828 |
100 |
0.503 |
| ssb | Neisseria meningitidis MC58 |
44.828 |
100 |
0.503 |