Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SR187_RS03200 Genome accession   NZ_AP018400
Coordinates   646776..647714 (+) Length   312 a.a.
NCBI ID   WP_120171489.1    Uniprot ID   A0A2Z5TV19
Organism   Streptococcus ruminantium strain GUT-187     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 641776..652714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR187_RS03185 (SR187_3250) - 642444..643046 (+) 603 WP_227985557.1 DUF3885 domain-containing protein -
  SR187_RS03190 (SR187_3255) - 643860..644456 (-) 597 WP_024533046.1 DUF1361 domain-containing protein -
  SR187_RS03195 (SR187_3260) metG 644708..646711 (+) 2004 WP_120171488.1 methionine--tRNA ligase -
  SR187_RS03200 (SR187_3265) coiA 646776..647714 (+) 939 WP_120171489.1 competence protein CoiA Machinery gene
  SR187_RS03205 (SR187_3270) pepF 647787..649589 (+) 1803 WP_120171490.1 oligoendopeptidase F Regulator
  SR187_RS03215 (SR187_3280) - 650049..650597 (+) 549 WP_024531732.1 DUF6630 family protein -
  SR187_RS03220 (SR187_3285) - 650675..651394 (+) 720 WP_024531731.1 O-methyltransferase -
  SR187_RS03225 (SR187_3290) - 651456..652472 (+) 1017 WP_120171491.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 36253.76 Da        Isoelectric Point: 8.9504

>NTDB_id=69446 SR187_RS03200 WP_120171489.1 646776..647714(+) (coiA) [Streptococcus ruminantium strain GUT-187]
MLVAINENGLLFNLLENPAPQGSFNCPGCGGPVRYKSGKVLRSHFAHVTLRDCHYFSENESAQHLSLKSYLYNWLIEHNK
VELEKCLPNLGQVADLFVNNHLALEVQCSSLSLSCLQERTSSYHKSGFQVLWLLGKDLWLKDRLSKLHKQFLSFSLNMGF
YLWELDDEKQELRLHYLIHEDLRGRVHSLTKRFAFGQGNLLDILRLPFTKQSLSRMTCPIDNHLPQYIAQQLYYKSPKWL
TLQAEAYCQGDNLLTKTALDWYPHIRLPSSAIGFAQIRKNLAPIYQAFDRFYKKTKAQKEQVLYSPAYYCQK

Nucleotide


Download         Length: 939 bp        

>NTDB_id=69446 SR187_RS03200 WP_120171489.1 646776..647714(+) (coiA) [Streptococcus ruminantium strain GUT-187]
ATGCTTGTTGCTATCAATGAAAACGGCTTGTTGTTTAATCTTTTAGAAAATCCTGCGCCGCAAGGCTCATTCAACTGTCC
AGGCTGTGGTGGTCCTGTACGATATAAATCCGGAAAAGTTCTGCGTTCGCACTTTGCTCACGTTACCCTGCGGGATTGTC
ATTACTTCTCCGAGAATGAGTCTGCCCAGCACCTATCGCTCAAGTCTTATCTGTATAACTGGTTGATTGAACACAATAAG
GTAGAGCTTGAAAAATGTTTACCAAACTTGGGACAGGTCGCAGATCTATTTGTCAATAATCATCTGGCCCTAGAAGTCCA
GTGTTCTAGTCTATCTCTTTCATGTTTGCAAGAACGAACAAGTTCTTATCATAAGTCAGGTTTTCAGGTATTGTGGCTGC
TAGGAAAAGACCTCTGGCTTAAAGACAGGCTTTCCAAACTACATAAGCAATTTCTCTCCTTCAGTCTTAATATGGGGTTT
TACTTATGGGAATTGGATGATGAAAAGCAGGAATTGCGACTTCATTATCTCATTCATGAAGATCTGCGTGGTAGGGTGCA
TTCCCTGACCAAGAGATTTGCATTTGGTCAGGGAAACCTGTTAGATATTTTGCGGCTACCTTTCACCAAGCAGAGTCTAT
CTAGGATGACCTGTCCGATAGACAATCATCTACCTCAATATATCGCCCAGCAGCTTTATTATAAATCTCCTAAATGGTTG
ACTCTACAGGCTGAAGCTTATTGCCAAGGTGACAATCTACTAACAAAGACCGCTCTGGATTGGTATCCCCACATCCGCCT
TCCAAGCTCTGCTATTGGCTTTGCCCAAATCAGAAAAAATCTAGCTCCAATCTACCAAGCTTTTGATAGATTTTATAAAA
AAACGAAAGCTCAGAAGGAACAAGTCCTGTATTCACCGGCCTACTACTGCCAGAAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z5TV19

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

50.962

100

0.51
  coiA Streptococcus pneumoniae TIGR4

50

100

0.5
  coiA Streptococcus pneumoniae Rx1

50

100

0.5
  coiA Streptococcus pneumoniae D39

50

100

0.5
  coiA Streptococcus pneumoniae R6

50

100

0.5
  coiA Lactococcus lactis subsp. cremoris KW2

42.056

100

0.433

Multiple sequence alignment