Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NAL94_RS09730 Genome accession   NZ_CP098034
Coordinates   385451..385996 (+) Length   181 a.a.
NCBI ID   WP_025767596.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain E110     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 380451..390996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAL94_RS09715 (NAL94_09715) uvrA 380525..383347 (-) 2823 WP_025767594.1 excinuclease ABC subunit UvrA -
  NAL94_RS09720 (NAL94_09720) galU 383497..384369 (-) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NAL94_RS09725 (NAL94_09725) qstR 384529..385173 (-) 645 WP_025767595.1 LuxR C-terminal-related transcriptional regulator Regulator
  NAL94_RS09730 (NAL94_09730) ssb 385451..385996 (+) 546 WP_025767596.1 single-stranded DNA-binding protein Machinery gene
  NAL94_RS09735 (NAL94_09735) csrD 386239..388248 (+) 2010 WP_005381201.1 RNase E specificity factor CsrD -
  NAL94_RS09740 (NAL94_09740) - 388260..389705 (+) 1446 WP_025767597.1 hypothetical protein -
  NAL94_RS09745 (NAL94_09745) gspM 389702..390352 (+) 651 WP_206225428.1 type II secretion system protein GspM -
  NAL94_RS09750 (NAL94_09750) - 390345..390677 (+) 333 WP_033907421.1 hypothetical protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20177.25 Da        Isoelectric Point: 4.9164

>NTDB_id=693679 NAL94_RS09730 WP_025767596.1 385451..385996(+) (ssb) [Vibrio alginolyticus strain E110]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNVPQQQQQQPQQQA
PQQSQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=693679 NAL94_RS09730 WP_025767596.1 385451..385996(+) (ssb) [Vibrio alginolyticus strain E110]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGTGCACCTATGGGCGGTCAACAGCAGCAACAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGTGCCTCAGCAACAGCAACAGCAACCACAACAACAGGCT
CCGCAGCAATCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.459

100

0.812
  ssb Glaesserella parasuis strain SC1401

55.851

100

0.58
  ssb Neisseria meningitidis MC58

44.92

100

0.464
  ssb Neisseria gonorrhoeae MS11

44.92

100

0.464