Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NBX27_RS08000 Genome accession   NZ_CP098031
Coordinates   1667958..1668431 (-) Length   157 a.a.
NCBI ID   WP_003774356.1    Uniprot ID   A0AAU9VGH2
Organism   Erysipelothrix rhusiopathiae strain 319078     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1662958..1673431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBX27_RS07975 (NBX27_07975) dnaB 1663282..1664652 (-) 1371 WP_003774361.1 replicative DNA helicase -
  NBX27_RS07980 (NBX27_07980) rplI 1664664..1665110 (-) 447 WP_238000062.1 50S ribosomal protein L9 -
  NBX27_RS07985 (NBX27_07985) - 1665112..1667067 (-) 1956 WP_250659029.1 DHH family phosphoesterase -
  NBX27_RS07990 (NBX27_07990) - 1667114..1667653 (-) 540 WP_238000060.1 DUF2232 domain-containing protein -
  NBX27_RS07995 (NBX27_07995) rpsR 1667707..1667940 (-) 234 WP_003774357.1 30S ribosomal protein S18 -
  NBX27_RS08000 (NBX27_08000) ssb 1667958..1668431 (-) 474 WP_003774356.1 single-stranded DNA-binding protein Machinery gene
  NBX27_RS08005 (NBX27_08005) rpsF 1668456..1668746 (-) 291 WP_003774354.1 30S ribosomal protein S6 -
  NBX27_RS08010 (NBX27_08010) - 1668886..1669524 (-) 639 WP_003774352.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  NBX27_RS08015 (NBX27_08015) - 1669586..1670437 (-) 852 WP_115355127.1 LysR family transcriptional regulator -
  NBX27_RS08020 (NBX27_08020) - 1670531..1671094 (+) 564 WP_115355128.1 chromate transporter -
  NBX27_RS08025 (NBX27_08025) - 1671078..1671617 (+) 540 WP_238000059.1 chromate transporter -
  NBX27_RS08030 (NBX27_08030) lysS 1671654..1673138 (-) 1485 WP_003774347.1 lysine--tRNA ligase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17584.36 Da        Isoelectric Point: 4.4023

>NTDB_id=693665 NBX27_RS08000 WP_003774356.1 1667958..1668431(-) (ssb) [Erysipelothrix rhusiopathiae strain 319078]
MINRTILVGRLTRDPELRKTQTGKSVVSFTVACNRRFGQQDETDFINCVAWNQTADFMANYLLKGALVGLEGRIQSRSYE
DATGKRVYVQEVVVDTLQSLESRAQRQEQGASQGQYQNQNSNQGGSSYTPSYQADPEPSFSMDDEPVLDITSDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=693665 NBX27_RS08000 WP_003774356.1 1667958..1668431(-) (ssb) [Erysipelothrix rhusiopathiae strain 319078]
ATGATTAATCGCACTATATTAGTGGGTCGTTTAACTCGAGATCCAGAACTTCGTAAAACACAAACTGGTAAATCAGTCGT
TTCGTTTACTGTAGCGTGCAACCGCCGCTTTGGACAACAAGATGAAACTGATTTTATCAATTGTGTGGCTTGGAATCAAA
CAGCTGATTTTATGGCAAATTACTTACTAAAGGGTGCTTTAGTAGGTCTAGAAGGTCGAATTCAATCGAGATCATATGAA
GACGCTACCGGTAAACGCGTATATGTTCAAGAGGTTGTTGTGGATACACTTCAATCACTCGAATCACGCGCACAACGTCA
AGAACAAGGCGCAAGCCAAGGTCAATATCAGAATCAAAACAGTAATCAAGGTGGATCAAGTTATACACCTTCATACCAAG
CTGATCCTGAACCATCATTCTCAATGGATGATGAGCCCGTTCTCGATATAACCAGTGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

45.882

100

0.497
  ssbA Bacillus subtilis subsp. subtilis str. 168

41.989

100

0.484
  ssb Neisseria meningitidis MC58

36.994

100

0.408
  ssb Neisseria gonorrhoeae MS11

33.526

100

0.369