Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M8T91_RS15795 Genome accession   NZ_CP098023
Coordinates   3862973..3863515 (-) Length   180 a.a.
NCBI ID   WP_301415131.1    Uniprot ID   -
Organism   Microbulbifer sp. MI-G     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3857973..3868515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8T91_RS15775 (M8T91_15750) galU 3859110..3859958 (-) 849 WP_301415127.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  M8T91_RS15780 (M8T91_15755) fabA 3860228..3860752 (+) 525 WP_301415128.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  M8T91_RS15785 (M8T91_15760) fabB 3860813..3862036 (+) 1224 WP_301415129.1 beta-ketoacyl-ACP synthase I -
  M8T91_RS15790 (M8T91_15765) - 3862119..3862958 (-) 840 WP_301415130.1 sugar nucleotide-binding protein -
  M8T91_RS15795 (M8T91_15770) ssb 3862973..3863515 (-) 543 WP_301415131.1 single-stranded DNA-binding protein Machinery gene
  M8T91_RS15800 (M8T91_15775) - 3863667..3864830 (-) 1164 WP_301415132.1 MFS transporter -
  M8T91_RS15805 (M8T91_15780) - 3864921..3866327 (-) 1407 WP_367317727.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19123.05 Da        Isoelectric Point: 5.7816

>NTDB_id=693593 M8T91_RS15795 WP_301415131.1 3862973..3863515(-) (ssb) [Microbulbifer sp. MI-G]
MARGINKVILIGNLGNDPETRYMPSGGAVTNVSLATSESWKDKQTGQQQERTEWHRVVFFNRLAEIAGEYLRKGSKVYIE
GALRTRKWQDKSTGQDRYSTEIVASEMQMLDGRGEAGGFGQGVSGAGMGAADTGAHPTGGQGAFAPANTAPSPAAPPNKQ
QPNQGSAGGFDNSFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=693593 M8T91_RS15795 WP_301415131.1 3862973..3863515(-) (ssb) [Microbulbifer sp. MI-G]
ATGGCCAGGGGAATTAATAAAGTTATTTTGATTGGCAATCTGGGCAATGATCCGGAAACCCGGTATATGCCGAGTGGGGG
TGCCGTAACCAACGTAAGCCTGGCCACCAGTGAGAGCTGGAAAGACAAGCAGACTGGCCAGCAGCAGGAACGCACCGAGT
GGCACCGGGTGGTGTTCTTCAACCGCCTGGCCGAAATTGCAGGAGAGTACCTGCGCAAGGGTTCCAAAGTGTATATTGAG
GGAGCATTGCGCACACGCAAGTGGCAGGACAAGAGCACCGGCCAGGATCGCTACAGCACTGAGATTGTCGCCAGTGAGAT
GCAGATGCTCGACGGCCGCGGTGAAGCGGGCGGCTTTGGCCAGGGTGTGAGTGGTGCCGGAATGGGCGCCGCCGATACCG
GTGCACACCCCACGGGTGGTCAGGGCGCCTTTGCACCGGCAAATACCGCCCCTTCGCCGGCGGCACCACCCAACAAGCAG
CAGCCCAACCAGGGCTCCGCCGGTGGGTTCGACAACAGCTTTGACGACGATATTCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

54.301

100

0.561
  ssb Vibrio cholerae strain A1552

53.226

100

0.55
  ssb Neisseria meningitidis MC58

49.171

100

0.494
  ssb Neisseria gonorrhoeae MS11

49.171

100

0.494