Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   NAF16_RS08520 Genome accession   NZ_CP098021
Coordinates   1813605..1814198 (-) Length   197 a.a.
NCBI ID   WP_024374700.1    Uniprot ID   -
Organism   Vibrio fluvialis strain V13     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1808605..1819198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAF16_RS08500 (NAF16_08500) - 1808783..1810054 (-) 1272 WP_075988687.1 DUF945 family protein -
  NAF16_RS08505 (NAF16_08505) - 1810284..1812215 (+) 1932 WP_024373560.1 ATP-binding protein -
  NAF16_RS08510 (NAF16_08510) - 1812238..1812735 (+) 498 WP_020327711.1 response regulator -
  NAF16_RS08515 (NAF16_08515) - 1812961..1813509 (+) 549 WP_020327712.1 hypothetical protein -
  NAF16_RS08520 (NAF16_08520) tfoX 1813605..1814198 (-) 594 WP_024374700.1 TfoX/Sxy family DNA transformation protein Regulator
  NAF16_RS08525 (NAF16_08525) - 1814571..1815491 (+) 921 WP_020327714.1 HDOD domain-containing protein -
  NAF16_RS08530 (NAF16_08530) - 1815511..1816416 (+) 906 WP_020327715.1 lysine exporter LysO family protein -
  NAF16_RS08535 (NAF16_08535) - 1816563..1817075 (+) 513 WP_020327716.1 hypothetical protein -
  NAF16_RS08540 (NAF16_08540) panP 1817215..1818858 (+) 1644 WP_323694646.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 23200.67 Da        Isoelectric Point: 7.8116

>NTDB_id=693548 NAF16_RS08520 WP_024374700.1 1813605..1814198(-) (tfoX) [Vibrio fluvialis strain V13]
MDMFEHRFFDYVIKFGTYQKRSMFGGIGLFQQDAMYALLTEDCIFIRGGEDLDEVLTNLGCDKYRHVKKQTTATVNYYDI
TQLFEQNHSELDSIIERSILYSIEQRSFQKSQANRRLRDLPNMQLTLERMVKKAGVDDVETFMRLGAPDVFNKVRRIYGS
DLDVKLLWKFAGAIEGIHWKLLQEPRKRQLLDICHGR

Nucleotide


Download         Length: 594 bp        

>NTDB_id=693548 NAF16_RS08520 WP_024374700.1 1813605..1814198(-) (tfoX) [Vibrio fluvialis strain V13]
ATGGATATGTTTGAGCATAGATTTTTCGATTATGTAATTAAGTTTGGTACCTACCAAAAACGTTCTATGTTTGGTGGTAT
TGGGTTGTTCCAGCAAGACGCGATGTATGCGCTGCTGACAGAAGATTGCATTTTCATTCGCGGCGGCGAAGATCTCGATG
AAGTTTTGACGAATCTTGGCTGTGATAAGTACCGTCATGTGAAGAAGCAGACAACGGCCACCGTTAATTACTACGATATT
ACGCAGTTATTTGAACAGAACCACTCTGAACTGGACTCCATTATTGAACGTTCAATACTGTATTCCATTGAGCAGCGCTC
TTTTCAGAAATCCCAGGCGAACCGTCGTTTGAGGGATTTGCCGAATATGCAGTTGACGCTGGAACGAATGGTAAAGAAAG
CGGGCGTTGACGATGTGGAAACATTCATGCGTCTGGGTGCGCCGGATGTGTTTAACAAAGTTCGCCGCATTTATGGCAGC
GATCTGGATGTGAAGTTATTGTGGAAGTTTGCCGGAGCGATTGAAGGTATTCACTGGAAATTGCTGCAAGAGCCGCGTAA
GCGCCAATTGCTCGATATCTGTCACGGTCGTTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(12-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

80

98.985

0.792
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

80

98.985

0.792
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

80

98.985

0.792
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

80

98.985

0.792
  tfoX Vibrio cholerae strain A1552

80

98.985

0.792
  tfoX Vibrio campbellii strain DS40M4

67.692

98.985

0.67
  tfoX Vibrio parahaemolyticus RIMD 2210633

67.179

98.985

0.665
  tfoX Aliivibrio fischeri ES114

58.115

96.954

0.563