Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NAG71_RS13950 Genome accession   NZ_CP097883
Coordinates   2846549..2847178 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli str. K-12 substr. MG1655 strain K-12     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2841549..2852178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAG71_RS13935 helD 2841791..2843845 (-) 2055 WP_001295354.1 DNA helicase IV -
  NAG71_RS13940 yccF 2843968..2844414 (+) 447 WP_001261235.1 YccF domain-containing protein -
  NAG71_RS13945 yccS 2844424..2846586 (+) 2163 WP_000875061.1 YccS family putative transporter -
  NAG71_RS13950 sxy/tfoX 2846549..2847178 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NAG71_RS13955 sulA 2847397..2847906 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NAG71_RS13960 ompA 2848263..2849303 (+) 1041 WP_000750416.1 porin OmpA -
  NAG71_RS13965 matP 2849379..2849831 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NAG71_RS13970 ycbZ 2850017..2851777 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=693282 NAG71_RS13950 WP_000839153.1 2846549..2847178(-) (sxy/tfoX) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=693282 NAG71_RS13950 WP_000839153.1 2846549..2847178(-) (sxy/tfoX) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1