Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   LpnA194_RS07615 Genome accession   NZ_CP114578
Coordinates   1671431..1672441 (-) Length   336 a.a.
NCBI ID   WP_011213854.1    Uniprot ID   Q5X4Y6
Organism   Legionella pneumophila strain A194     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1666431..1677441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LpnA194_RS07585 (LpnA194_01520) - 1666770..1667603 (-) 834 WP_013101480.1 S1/P1 nuclease -
  LpnA194_RS07590 (LpnA194_01521) tolB 1667606..1668865 (-) 1260 WP_013101481.1 Tol-Pal system beta propeller repeat protein TolB -
  LpnA194_RS07595 (LpnA194_01522) tolA 1668871..1669869 (-) 999 WP_013101482.1 cell envelope integrity protein TolA -
  LpnA194_RS07600 (LpnA194_01523) tolR 1669866..1670321 (-) 456 WP_010947302.1 protein TolR -
  LpnA194_RS07605 (LpnA194_01524) tolQ 1670330..1671007 (-) 678 WP_011946571.1 protein TolQ -
  LpnA194_RS07610 (LpnA194_01525) ybgC 1671032..1671427 (-) 396 WP_011946572.1 tol-pal system-associated acyl-CoA thioesterase -
  LpnA194_RS07615 (LpnA194_01526) ruvB 1671431..1672441 (-) 1011 WP_011213854.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LpnA194_RS07620 (LpnA194_01527) - 1672588..1673151 (-) 564 WP_011946574.1 sigma-70 family RNA polymerase sigma factor -
  LpnA194_RS07625 (LpnA194_01528) - 1673253..1673696 (-) 444 WP_042637193.1 hypothetical protein -
  LpnA194_RS07630 (LpnA194_01529) - 1673638..1673877 (-) 240 WP_011946576.1 succinate dehydrogenase assembly factor 2 -
  LpnA194_RS07635 (LpnA194_01530) - 1674003..1674992 (+) 990 WP_040147295.1 YgfZ/GcvT domain-containing protein -
  LpnA194_RS07640 (LpnA194_01531) - 1675027..1675575 (-) 549 WP_011946578.1 cytochrome b -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37104.67 Da        Isoelectric Point: 5.4513

>NTDB_id=693181 LpnA194_RS07615 WP_011213854.1 1671431..1672441(-) (ruvB) [Legionella pneumophila strain A194]
MLESDRLISSQSIVSEDAMDRAIRPLSLSEYVGQDSVSSQMQIFINAARKRNDPLDHVLIFGPPGLGKTTLANIIAHEMG
VNIRQTSGPVIERAGDIAAILTNLQQNDVLFIDEIHRLSPVIEEILYPAMEDYKLDIMIGEGPAARSIKLELPPFTLIGA
TTRAGLLTSPLRDRFGIVQRLEYYSVDSLTKIVARSAHLLGVPTKPEGAREIALRSRGTPRIANRLLRRVRDYSEVKGNG
IITVDMAQQALEMLEVDQHGFDLMDRKLLLAVIEHFNGGPVGIDSIAAAIGEEKGTIEDVLEPFLIQQGFLMRTPRGRIA
TSKAYQHFGFSAIEQE

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=693181 LpnA194_RS07615 WP_011213854.1 1671431..1672441(-) (ruvB) [Legionella pneumophila strain A194]
ATGCTCGAAAGTGATCGCCTAATAAGTAGTCAAAGTATTGTCTCGGAAGACGCAATGGATAGAGCCATCAGGCCGCTTAG
CTTGAGCGAGTACGTAGGGCAAGATTCTGTAAGCTCACAGATGCAGATATTTATCAATGCGGCAAGAAAGAGAAACGATC
CTTTGGATCATGTTCTTATTTTTGGCCCACCTGGCCTTGGTAAAACTACTCTGGCAAATATCATAGCTCACGAAATGGGA
GTGAATATCAGACAAACTTCTGGGCCAGTGATTGAGCGTGCTGGCGATATTGCTGCTATATTGACGAATCTACAACAAAA
TGATGTACTATTTATTGATGAAATTCATAGATTAAGTCCTGTTATAGAAGAAATTCTTTATCCAGCCATGGAAGATTATA
AGTTGGATATCATGATAGGAGAGGGGCCAGCAGCACGATCTATTAAATTGGAGTTACCTCCCTTTACATTAATTGGAGCA
ACGACGAGAGCAGGGTTGCTTACCTCGCCATTAAGGGATAGATTTGGTATAGTGCAACGTTTGGAATATTATTCTGTTGA
TTCGCTTACCAAGATTGTGGCACGCTCTGCGCATTTGCTTGGTGTCCCTACAAAACCCGAAGGAGCAAGAGAAATTGCAT
TACGCTCCAGAGGAACACCACGAATAGCCAATCGCCTGTTAAGAAGAGTCAGGGATTATTCTGAAGTGAAAGGAAATGGC
ATCATTACTGTTGATATGGCCCAACAAGCATTGGAAATGCTTGAAGTGGATCAGCACGGGTTTGATTTAATGGATAGAAA
ATTATTGTTAGCGGTGATAGAACACTTCAATGGTGGTCCAGTAGGCATAGATAGTATTGCAGCTGCTATTGGCGAAGAAA
AAGGGACTATAGAAGATGTTTTAGAGCCATTTTTAATACAACAAGGCTTTCTAATGCGCACTCCTCGCGGTAGAATAGCC
ACTTCGAAAGCTTATCAGCATTTTGGCTTTAGTGCGATCGAACAGGAATAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5X4Y6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.366

97.619

0.589
  ruvB Streptococcus pneumoniae TIGR4

56.667

98.214

0.557
  ruvB Streptococcus pneumoniae R6

56.667

98.214

0.557
  ruvB Streptococcus pneumoniae D39

56.667

98.214

0.557
  ruvB Helicobacter pylori 26695

52.795

95.833

0.506
  ruvB Synechocystis sp. PCC 6803

53.548

92.262

0.494