Detailed information NTG0693178

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CKCBHOJB_RS14870
• Genome accession: NZ_CP097870
• Coordinates: 3226294..3227145 (+)
• Length: 283 a.a.
• NCBI ID: WP_281049436.1
• Uniprot ID: -
• Organism: Thauera sp. GDN1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3221294..3232145

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CKCBHOJB_RS14855 (CKCBHOJB_02963)	ccsA	3222411..3223244 (+)	834	WP_281049433.1	cytochrome c biogenesis protein CcsA	-
CKCBHOJB_RS14860 (CKCBHOJB_02964)	pilB	3223330..3225045 (+)	1716	WP_281049434.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CKCBHOJB_RS14865 (CKCBHOJB_02965)	pilC	3225061..3226290 (+)	1230	WP_281049435.1	type II secretion system F family protein	Machinery gene
CKCBHOJB_RS14870 (CKCBHOJB_02966)	pilD	3226294..3227145 (+)	852	WP_281049436.1	A24 family peptidase	Machinery gene
CKCBHOJB_RS14875 (CKCBHOJB_02967)	-	3227278..3227541 (+)	264	WP_281049437.1	zinc ribbon domain-containing protein	-
CKCBHOJB_RS14880 (CKCBHOJB_02968)	-	3227543..3228169 (+)	627	WP_281049438.1	DUF502 domain-containing protein	-
CKCBHOJB_RS14885 (CKCBHOJB_02969)	aspS	3228254..3230053 (+)	1800	WP_281049439.1	aspartate--tRNA ligase	-
CKCBHOJB_RS14890 (CKCBHOJB_02970)	-	3230139..3230534 (+)	396	WP_281049440.1	ribonuclease domain-containing protein	-
CKCBHOJB_RS14895 (CKCBHOJB_02971)	-	3230531..3230914 (+)	384	WP_281049441.1	barstar family protein	-
CKCBHOJB_RS14900 (CKCBHOJB_02972)	-	3230853..3231086 (-)	234	WP_348634850.1	cysteine-rich CWC family protein	-
CKCBHOJB_RS14905 (CKCBHOJB_02973)	-	3231317..3231754 (+)	438	WP_281049442.1	Hsp20/alpha crystallin family protein	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 30422.84 Da
• Isoelectric Point: 7.1463

>NTDB_id=693178 CKCBHOJB_RS14870 WP_281049436.1 3226294..3227145(+) (pilD) [Thauera sp. GDN1]
MLALLHDPVAFATLATLLGLFVGSFLNVVIHRLPKMMEQDWHAQAAELRGEDAPAGERFNLATPRSRCPHCGHQIGALEN
IPVVSYVLLRGRCRHCGAGISKRYPIVEAFTALLSGYAAWHFGFGAAAAGALLFIWAMMALAFIDLDTQLLPDDITLPLL
WLGLAFNLADTYTELSSAVVGAMAGYLALWSVFWLFKLATGKEGMGYGDFKLLGAIGAWLGWQVLPLTILLSSVVGAAVG
IGLIVFARHGRNVPIPFGPYLAAAGVIALFWGEALTTRYLGLL

Nucleotide

• Length: 852 bp

>NTDB_id=693178 CKCBHOJB_RS14870 WP_281049436.1 3226294..3227145(+) (pilD) [Thauera sp. GDN1]
ATGCTCGCGCTGCTGCACGACCCGGTGGCCTTCGCCACGCTCGCGACCCTGCTCGGCCTGTTCGTCGGCAGCTTCCTCAA
CGTCGTCATCCATCGCCTGCCGAAGATGATGGAGCAGGACTGGCACGCCCAGGCCGCCGAACTGCGCGGCGAGGACGCGC
CGGCCGGCGAACGCTTCAACCTCGCCACCCCACGCTCGCGCTGCCCGCATTGCGGACACCAGATCGGCGCGCTGGAGAAC
ATCCCGGTGGTCAGCTACGTGCTGCTGCGCGGGCGCTGCCGCCACTGCGGCGCCGGCATCAGCAAGCGCTACCCGATCGT
GGAGGCCTTCACCGCGCTGCTGTCGGGCTATGCGGCCTGGCACTTCGGCTTCGGCGCCGCCGCGGCCGGTGCCCTGCTCT
TCATCTGGGCGATGATGGCGCTGGCCTTCATCGACCTCGACACCCAACTGCTGCCGGACGACATCACCCTGCCCCTGCTG
TGGCTGGGCCTGGCCTTCAACCTCGCGGACACCTACACCGAACTGTCGAGCGCGGTCGTCGGCGCGATGGCCGGCTACCT
CGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTCGCCACCGGCAAGGAAGGCATGGGTTACGGCGACTTCAAGCTTCTCG
GCGCGATCGGCGCCTGGCTGGGCTGGCAGGTGCTGCCGCTGACCATCCTGCTGTCCTCCGTGGTCGGGGCGGCGGTCGGC
ATCGGCCTGATCGTGTTCGCCCGCCACGGGCGCAACGTGCCGATCCCCTTCGGCCCCTACCTCGCCGCCGCCGGCGTGAT
CGCGCTGTTCTGGGGCGAAGCGCTGACGACACGCTATCTCGGCCTGCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (133-241)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-122)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.909	97.173	0.534
pilD	Vibrio campbellii strain DS40M4	52.297	100	0.523
pilD	Acinetobacter baumannii D1279779	48.029	98.587	0.474
pilD	Acinetobacter nosocomialis M2	46.953	98.587	0.463
pilD	Neisseria gonorrhoeae MS11	48.828	90.459	0.442