Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CKCBHOJB_RS04730 Genome accession   NZ_CP097870
Coordinates   1035316..1035822 (+) Length   168 a.a.
NCBI ID   WP_281050864.1    Uniprot ID   -
Organism   Thauera sp. GDN1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1030316..1040822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKCBHOJB_RS04720 (CKCBHOJB_00947) uvrA 1031119..1033941 (-) 2823 WP_281050862.1 excinuclease ABC subunit UvrA -
  CKCBHOJB_RS04725 (CKCBHOJB_00948) - 1034037..1035242 (+) 1206 WP_281050863.1 MFS transporter -
  CKCBHOJB_RS04730 (CKCBHOJB_00949) ssb 1035316..1035822 (+) 507 WP_281050864.1 single-stranded DNA-binding protein Machinery gene
  CKCBHOJB_RS04735 (CKCBHOJB_00950) - 1035931..1036896 (+) 966 WP_281050865.1 MBL fold metallo-hydrolase -
  CKCBHOJB_RS04740 (CKCBHOJB_00951) - 1036899..1037741 (+) 843 WP_281050866.1 tRNA threonylcarbamoyladenosine dehydratase -
  CKCBHOJB_RS04745 (CKCBHOJB_00952) - 1037741..1038127 (+) 387 WP_281050867.1 CbiX/SirB N-terminal domain-containing protein -
  CKCBHOJB_RS04750 (CKCBHOJB_00953) - 1038287..1039399 (+) 1113 WP_281050868.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18354.24 Da        Isoelectric Point: 5.9624

>NTDB_id=693168 CKCBHOJB_RS04730 WP_281050864.1 1035316..1035822(+) (ssb) [Thauera sp. GDN1]
MASVNKVILIGNLGADPENRFAPSGDAICNIRLATTENWRDKNTGERREATEWHRVSFYGKLAEIAGQYLRKGSQVYIEG
SLRTRKWQDQSGQDRYTTEIRADEMKMLGGRREGGDAPMRSNEGGGGWDAPASAPAPRSAPAQAAPRPQSPPAQQSGGFG
DFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=693168 CKCBHOJB_RS04730 WP_281050864.1 1035316..1035822(+) (ssb) [Thauera sp. GDN1]
ATGGCATCCGTCAATAAAGTCATCCTGATCGGCAACCTCGGCGCCGATCCGGAAAACCGCTTCGCCCCCTCCGGCGACGC
GATCTGCAACATCCGCCTGGCCACCACCGAGAACTGGCGCGACAAGAACACCGGGGAACGCCGCGAGGCCACCGAGTGGC
ACCGCGTGTCCTTCTACGGCAAGCTCGCCGAGATCGCCGGCCAGTACCTGCGCAAGGGCAGCCAGGTCTACATCGAGGGC
AGCCTGCGCACGCGCAAGTGGCAGGACCAGAGCGGCCAGGACCGCTACACGACCGAGATCCGCGCCGACGAGATGAAGAT
GCTCGGCGGCCGTCGCGAGGGCGGCGACGCGCCGATGCGCAGCAACGAAGGTGGTGGCGGTTGGGACGCCCCGGCCTCGG
CTCCCGCGCCGCGCAGCGCGCCCGCACAGGCCGCGCCGCGTCCGCAGTCGCCCCCGGCGCAGCAGTCGGGCGGCTTCGGC
GACTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.065

100

0.625
  ssb Glaesserella parasuis strain SC1401

51.667

100

0.554
  ssb Neisseria meningitidis MC58

50.562

100

0.536
  ssb Neisseria gonorrhoeae MS11

49.432

100

0.518