Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   M8C01_RS06570 Genome accession   NZ_CP097858
Coordinates   1469052..1469639 (+) Length   195 a.a.
NCBI ID   WP_009705834.1    Uniprot ID   A0AAP9KAC0
Organism   Vibrio owensii strain GL-605     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1464052..1474639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8C01_RS06550 panP 1464263..1465909 (-) 1647 WP_171370190.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  M8C01_RS06555 - 1466031..1466543 (-) 513 WP_122067734.1 hypothetical protein -
  M8C01_RS06560 - 1466752..1467657 (-) 906 WP_039842579.1 lysine exporter LysO family protein -
  M8C01_RS06565 - 1467761..1468681 (-) 921 WP_009705833.1 HDOD domain-containing protein -
  M8C01_RS06570 tfoX 1469052..1469639 (+) 588 WP_009705834.1 TfoX/Sxy family DNA transformation protein Regulator
  M8C01_RS06575 - 1469851..1470399 (-) 549 WP_005442235.1 hypothetical protein -
  M8C01_RS06580 - 1470606..1471103 (-) 498 WP_005442233.1 response regulator -
  M8C01_RS06585 - 1471100..1473040 (-) 1941 WP_171370191.1 ATP-binding protein -
  M8C01_RS06590 - 1473226..1474488 (+) 1263 WP_171370192.1 DUF945 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22398.56 Da        Isoelectric Point: 5.3762

>NTDB_id=693105 M8C01_RS06570 WP_009705834.1 1469052..1469639(+) (tfoX) [Vibrio owensii strain GL-605]
MDMTDQAFFNYVSNFSEYQKRSMFGGIGLFSNDAMFALVSNDCCYLRGGNGLDDEFTQLNCEKYKHVKKQTTATVNYYDV
TDLFDSSFDGLDELLQKSIECSIKERKYQKSSASRRLRDLPNMQLTLERMVKKAGIDDVDTFLELGPVEVFNKVRVAYGS
DVDVKLLWKFAGAIDGIHWKLIQEPRKKQLLAMCE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=693105 M8C01_RS06570 WP_009705834.1 1469052..1469639(+) (tfoX) [Vibrio owensii strain GL-605]
ATGGACATGACAGACCAAGCTTTTTTTAACTATGTAAGCAATTTTAGTGAGTACCAAAAACGTTCAATGTTTGGTGGTAT
TGGTTTATTCAGCAATGACGCAATGTTCGCGTTGGTAAGTAACGACTGTTGTTATTTACGCGGCGGAAATGGGTTGGATG
ATGAGTTTACTCAACTAAACTGCGAAAAATATAAGCACGTCAAAAAACAAACGACGGCAACCGTAAACTATTACGACGTA
ACAGATCTGTTTGATTCAAGCTTTGATGGACTTGACGAACTGTTACAAAAATCAATTGAATGTTCTATTAAGGAACGCAA
ATACCAAAAGTCTTCCGCCAGTAGACGTTTGCGCGATCTGCCAAATATGCAGTTAACGCTCGAACGCATGGTAAAGAAAG
CCGGCATTGATGATGTCGACACATTTTTAGAACTTGGACCGGTAGAAGTGTTCAACAAAGTCAGAGTCGCTTACGGCAGT
GACGTTGATGTGAAACTTCTATGGAAATTTGCTGGTGCGATCGATGGTATCCACTGGAAATTGATCCAAGAGCCACGCAA
AAAGCAATTGCTAGCGATGTGCGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio campbellii strain DS40M4

97.436

100

0.974
  tfoX Vibrio parahaemolyticus RIMD 2210633

91.282

100

0.913
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

68.912

98.974

0.682
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

68.912

98.974

0.682
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

68.912

98.974

0.682
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

68.912

98.974

0.682
  tfoX Vibrio cholerae strain A1552

68.912

98.974

0.682
  tfoX Aliivibrio fischeri ES114

58.639

97.949

0.574