Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   M9H69_RS01665 Genome accession   NZ_CP097843
Coordinates   299038..299964 (+) Length   308 a.a.
NCBI ID   WP_000103693.1    Uniprot ID   A0A3R9K8J0
Organism   Streptococcus oralis strain HP01     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 294038..304964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H69_RS01655 (M9H69_01655) amiA3 295499..297475 (+) 1977 WP_250315738.1 peptide ABC transporter substrate-binding protein Regulator
  M9H69_RS01660 (M9H69_01660) amiC 297542..299038 (+) 1497 WP_221161208.1 ABC transporter permease Regulator
  M9H69_RS01665 (M9H69_01665) amiD 299038..299964 (+) 927 WP_000103693.1 oligopeptide ABC transporter permease OppC Regulator
  M9H69_RS01670 (M9H69_01670) amiE 299973..301040 (+) 1068 WP_000159803.1 ABC transporter ATP-binding protein Regulator
  M9H69_RS01675 (M9H69_01675) amiF 301051..301980 (+) 930 WP_001291313.1 ATP-binding cassette domain-containing protein Regulator
  M9H69_RS01680 (M9H69_01680) - 302069..303508 (-) 1440 WP_001043438.1 TrkH family potassium uptake protein -
  M9H69_RS01685 (M9H69_01685) trkA 303512..304861 (-) 1350 WP_250315739.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34589.54 Da        Isoelectric Point: 9.0162

>NTDB_id=692912 M9H69_RS01665 WP_000103693.1 299038..299964(+) (amiD) [Streptococcus oralis strain HP01]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWGSVFRQFLKKKSTVIMLGILVAIILMSFIYPMFSDFDFNDVSKVNDFSAR
FIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATFINLVIGVIVGGIWGISKSVDRVMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAYSIRIQIMRYRDLEYNLASQTLGTPTFKIIVKNIMPQLVSVIVSTMTLMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=692912 M9H69_RS01665 WP_000103693.1 299038..299964(+) (amiD) [Streptococcus oralis strain HP01]
ATGTCAACAATTGATAAAGAAAAATTTCAGTTCGTAAAACGTGATGATTTTGCCTCTGAAACGATTGATGCTCCTGCCTA
CTCTTACTGGGGCTCTGTATTTAGACAGTTTTTAAAGAAAAAATCAACAGTCATTATGTTGGGAATATTGGTAGCTATTA
TTTTGATGAGTTTTATCTATCCGATGTTTTCAGACTTTGACTTTAACGATGTAAGTAAGGTTAATGACTTTAGCGCTCGT
TTTATTAAGCCCAATGCCGAACACTGGTTTGGTACTGATAGCAATGGTAAATCCTTGTTTGATGGAGTTTGGTTTGGTGC
GCGTAATTCTATCCTCATTTCTGTAATTGCTACTTTTATCAACCTTGTGATCGGGGTGATTGTTGGTGGAATCTGGGGAA
TTTCAAAATCTGTTGACCGCGTCATGATGGAAGTTTATAACATTATTTCAAACATTCCATCTCTCTTGATTGTTATCGTC
TTGACTTACTCAATTGGTGCTGGTTTCTGGAATTTGATCTTCGCTATGAGTGTGACGACTTGGATTGGTATTGCTTATTC
AATTCGTATTCAAATCATGCGTTACCGTGACTTGGAATACAACCTTGCTTCTCAAACTCTTGGAACACCAACCTTCAAAA
TCATCGTGAAAAATATCATGCCACAATTGGTATCTGTTATTGTTTCTACAATGACCTTGATGTTGCCAAGCTTTATCTCT
TATGAGGCTTTCCTTTCCTTCTTTGGATTGGGGTTGCCTGTAACAGTGCCAAGTTTGGGACGTTTGATCTCAGATTACTC
ACAAAACGTTACGACCAACGCGTACTTGTTCTGGATTCCATTGACAACCTTGATTTTGGTATCCCTATCTCTATTCGTTG
TTGGTCAGAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9K8J0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.442

100

0.834
  amiD Streptococcus thermophilus LMG 18311

81.818

100

0.818
  amiD Streptococcus thermophilus LMD-9

81.818

100

0.818