Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   M9H69_RS01675 Genome accession   NZ_CP097843
Coordinates   301051..301980 (+) Length   309 a.a.
NCBI ID   WP_001291313.1    Uniprot ID   A0A0F2E5K0
Organism   Streptococcus oralis strain HP01     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 296051..306980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H69_RS01660 (M9H69_01660) amiC 297542..299038 (+) 1497 WP_221161208.1 ABC transporter permease Regulator
  M9H69_RS01665 (M9H69_01665) amiD 299038..299964 (+) 927 WP_000103693.1 oligopeptide ABC transporter permease OppC Regulator
  M9H69_RS01670 (M9H69_01670) amiE 299973..301040 (+) 1068 WP_000159803.1 ABC transporter ATP-binding protein Regulator
  M9H69_RS01675 (M9H69_01675) amiF 301051..301980 (+) 930 WP_001291313.1 ATP-binding cassette domain-containing protein Regulator
  M9H69_RS01680 (M9H69_01680) - 302069..303508 (-) 1440 WP_001043438.1 TrkH family potassium uptake protein -
  M9H69_RS01685 (M9H69_01685) trkA 303512..304861 (-) 1350 WP_250315739.1 Trk system potassium transporter TrkA -
  M9H69_RS01690 (M9H69_01690) - 305263..305766 (+) 504 WP_007522363.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  M9H69_RS01695 (M9H69_01695) - 306179..306742 (+) 564 WP_250315740.1 ECF transporter S component -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35067.32 Da        Isoelectric Point: 7.2939

>NTDB_id=692914 M9H69_RS01675 WP_001291313.1 301051..301980(+) (amiF) [Streptococcus oralis strain HP01]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGEIIFDGHKINGKKSHK
ESSELIRRIQMIFQDPAASLNERATVDYIISEGLYNYHLFKDEEERKEKVQKMIHEVGLLKEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPVHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYKEALKK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=692914 M9H69_RS01675 WP_001291313.1 301051..301980(+) (amiF) [Streptococcus oralis strain HP01]
ATGTCTGAAAAATTAGTAGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTTGCCGTTAAAAA
CGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCTCTCGTTGGTGAATCTGGTAGTGGGAAAACGACGATTGGTCGTG
CCATTATTGGTTTGAATAATACTAGTAAAGGTGAAATCATCTTTGACGGTCATAAGATCAATGGGAAAAAATCTCATAAG
GAATCTTCAGAGTTGATCCGCCGTATCCAGATGATTTTCCAAGACCCTGCAGCCAGTTTAAATGAACGTGCGACAGTTGA
CTATATCATCTCTGAAGGTCTTTACAACTACCACTTGTTCAAAGACGAAGAAGAGCGAAAAGAAAAAGTTCAAAAGATGA
TTCATGAAGTCGGTCTTTTGAAAGAGCACTTGACCCGTTACCCACACGAGTTTTCTGGTGGTCAACGTCAACGTATTGGG
ATTGCCCGTGCTCTTGTGATGGAACCTGATTTCGTTATTGCGGATGAGCCGATTTCAGCCTTGGACGTGTCTGTTCGTGC
GCAAGTCTTGAACTTGCTCAAGAAGTTTCAAAAAGAATTGGGCTTGACCTATCTCTTTATCGCGCATGACTTGTCAGTTG
TTCGCTTTATCTCAGATCGTATCGCAGTTATCTATAAGGGTGTTATCGTTGAAGTAGCGGAAACAGAGGAGTTGTTTAAC
AATCCTGTTCATCCGTACACTCAAGCACTTCTATCTGCTGTACCGATTCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAAGTCTATGATCCTAGCCAACATGACTATGAGACAGACAAGCCGTCTATGGTGGAAATTCGTCCAGGTCACTATGTTT
GGGCCAATCAAGCAGAACTTGCTCGTTACAAGGAAGCTCTTAAAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2E5K0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

84.466

100

0.845
  amiF Streptococcus thermophilus LMG 18311

84.142

100

0.841
  amiF Streptococcus thermophilus LMD-9

83.819

100

0.838