Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M9381_RS02460 Genome accession   NZ_CP097831
Coordinates   511343..511879 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Shigella flexneri strain D     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 506343..516879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9381_RS02440 (M9381_02440) aphA 506632..507345 (+) 714 WP_001226928.1 acid phosphatase AphA -
  M9381_RS02445 (M9381_02445) - 507456..507872 (+) 417 WP_000270367.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  M9381_RS02450 (M9381_02450) - 507876..508232 (+) 357 WP_000155673.1 MmcQ/YjbR family DNA-binding protein -
  M9381_RS02455 (M9381_02455) uvrA 508267..511089 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  M9381_RS02460 (M9381_02460) ssb 511343..511879 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  M9381_RS02470 (M9381_02470) - 512734..512832 (+) 99 Protein_482 hypothetical protein -
  M9381_RS02475 (M9381_02475) mdtN 512851..513882 (+) 1032 WP_000446341.1 multidrug efflux transporter periplasmic adaptor subunit MdtN -
  M9381_RS02480 (M9381_02480) mdtO 513882..515930 (+) 2049 WP_001275132.1 multidrug efflux transporter permease subunit MdtO -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=692809 M9381_RS02460 WP_000168305.1 511343..511879(+) (ssb) [Shigella flexneri strain D]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=692809 M9381_RS02460 WP_000168305.1 511343..511879(+) (ssb) [Shigella flexneri strain D]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAACCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489