Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M9410_RS01730 Genome accession   NZ_CP097799
Coordinates   361605..362105 (-) Length   166 a.a.
NCBI ID   WP_005725039.1    Uniprot ID   A0A379BD60
Organism   Pasteurella multocida strain 39639     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 356605..367105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9410_RS01695 (M9410_01695) ybeD 357120..357416 (+) 297 WP_005719420.1 DUF493 family protein YbeD -
  M9410_RS01700 (M9410_01700) lipB 357423..358079 (+) 657 WP_005725032.1 lipoyl(octanoyl) transferase LipB -
  M9410_RS01705 (M9410_01705) lipA 358144..359106 (+) 963 WP_005719422.1 lipoyl synthase -
  M9410_RS01710 (M9410_01710) - 359182..359601 (-) 420 WP_005719426.1 DUF417 family protein -
  M9410_RS01725 (M9410_01725) folD 360244..361098 (+) 855 WP_005725034.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  M9410_RS01730 (M9410_01730) ssb 361605..362105 (-) 501 WP_005725039.1 single-stranded DNA-binding protein Machinery gene
  M9410_RS01735 (M9410_01735) uvrA 362277..365108 (+) 2832 WP_010907420.1 excinuclease ABC subunit UvrA -
  M9410_RS01740 (M9410_01740) sodC 365179..365739 (+) 561 WP_005725042.1 superoxide dismutase family protein -
  M9410_RS01745 (M9410_01745) rlmB 365824..366561 (-) 738 WP_005725044.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18657.68 Da        Isoelectric Point: 5.3353

>NTDB_id=692677 M9410_RS01730 WP_005725039.1 361605..362105(-) (ssb) [Pasteurella multocida strain 39639]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=692677 M9410_RS01730 WP_005725039.1 361605..362105(-) (ssb) [Pasteurella multocida strain 39639]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGGAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGTCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAGGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGACCGCTACACTACCGAGATCCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTGGCTACGGCGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A379BD60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.231

100

0.759
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47