Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M9414_RS01890 Genome accession   NZ_CP097795
Coordinates   387853..388353 (-) Length   166 a.a.
NCBI ID   WP_083004547.1    Uniprot ID   -
Organism   Pasteurella multocida strain 34030     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 382853..393353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9414_RS01875 (M9414_01875) - 382877..384913 (-) 2037 WP_010907417.1 integrase -
  M9414_RS01880 (M9414_01880) - 384916..386436 (-) 1521 WP_010907418.1 site-specific integrase -
  M9414_RS01885 (M9414_01885) - 386423..387709 (-) 1287 WP_005631039.1 site-specific integrase -
  M9414_RS01890 (M9414_01890) ssb 387853..388353 (-) 501 WP_083004547.1 single-stranded DNA-binding protein Machinery gene
  M9414_RS01895 (M9414_01895) uvrA 388525..391355 (+) 2831 Protein_366 excinuclease ABC subunit UvrA -
  M9414_RS01900 (M9414_01900) sodC 391426..391986 (+) 561 WP_064964961.1 superoxide dismutase family protein -
  M9414_RS01905 (M9414_01905) rlmB 392072..392809 (-) 738 WP_083004553.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18685.73 Da        Isoelectric Point: 5.3353

>NTDB_id=692589 M9414_RS01890 WP_083004547.1 387853..388353(-) (ssb) [Pasteurella multocida strain 34030]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGVQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=692589 M9414_RS01890 WP_083004547.1 387853..388353(-) (ssb) [Pasteurella multocida strain 34030]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGTGTCGCCACAAGCGAAAGTTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTAGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAAGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTACACTACCGAAATCCAAGGCGACGTGTTACAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTGGCTACGGCGTACAACCTTCTCGTCCAGCGACAAAACCCGCCCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

67.568

100

0.753
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

43.503

100

0.464
  ssb Neisseria gonorrhoeae MS11

43.503

100

0.464