Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M9413_RS02135 Genome accession   NZ_CP097794
Coordinates   442520..443020 (-) Length   166 a.a.
NCBI ID   WP_005725039.1    Uniprot ID   A0A379BD60
Organism   Pasteurella multocida strain 28606     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 437520..448020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9413_RS02120 (M9413_02120) - 437544..439580 (-) 2037 WP_010907417.1 integrase -
  M9413_RS02125 (M9413_02125) - 439583..441103 (-) 1521 WP_010907418.1 site-specific integrase -
  M9413_RS02130 (M9413_02130) - 441090..442376 (-) 1287 WP_005631039.1 site-specific integrase -
  M9413_RS02135 (M9413_02135) ssb 442520..443020 (-) 501 WP_005725039.1 single-stranded DNA-binding protein Machinery gene
  M9413_RS02140 (M9413_02140) uvrA 443192..446023 (+) 2832 WP_250265471.1 excinuclease ABC subunit UvrA -
  M9413_RS02145 (M9413_02145) sodC 446094..446654 (+) 561 WP_005725042.1 superoxide dismutase family protein -
  M9413_RS02150 (M9413_02150) rlmB 446739..447476 (-) 738 WP_005725044.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18657.68 Da        Isoelectric Point: 5.3353

>NTDB_id=692570 M9413_RS02135 WP_005725039.1 442520..443020(-) (ssb) [Pasteurella multocida strain 28606]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=692570 M9413_RS02135 WP_005725039.1 442520..443020(-) (ssb) [Pasteurella multocida strain 28606]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGGAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAGGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTACACTACTGAAATCCAAGGTGACGTGTTACAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTACGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTGGCTACGGCGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A379BD60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.231

100

0.759
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47