Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M9419_RS01715 Genome accession   NZ_CP097791
Coordinates   358405..358905 (-) Length   166 a.a.
NCBI ID   WP_064964959.1    Uniprot ID   -
Organism   Pasteurella multocida strain 41060     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 353405..363905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9419_RS01680 (M9419_01680) ybeD 353919..354215 (+) 297 WP_005719420.1 DUF493 family protein YbeD -
  M9419_RS01685 (M9419_01685) lipB 354222..354878 (+) 657 WP_059245729.1 lipoyl(octanoyl) transferase LipB -
  M9419_RS01690 (M9419_01690) lipA 354943..355905 (+) 963 WP_059245730.1 lipoyl synthase -
  M9419_RS01695 (M9419_01695) - 355983..356402 (-) 420 WP_005719426.1 DUF417 family protein -
  M9419_RS01710 (M9419_01710) folD 357045..357899 (+) 855 WP_046333499.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  M9419_RS01715 (M9419_01715) ssb 358405..358905 (-) 501 WP_064964959.1 single-stranded DNA-binding protein Machinery gene
  M9419_RS01720 (M9419_01720) uvrA 359077..361908 (+) 2832 WP_064964960.1 excinuclease ABC subunit UvrA -
  M9419_RS01725 (M9419_01725) sodC 361979..362539 (+) 561 WP_064964961.1 superoxide dismutase family protein -
  M9419_RS01730 (M9419_01730) rlmB 362625..363362 (-) 738 WP_064964962.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18696.69 Da        Isoelectric Point: 5.3353

>NTDB_id=692503 M9419_RS01715 WP_064964959.1 358405..358905(-) (ssb) [Pasteurella multocida strain 41060]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYSTQAPRPAQKPAPQNEPPVDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=692503 M9419_RS01715 WP_064964959.1 358405..358905(-) (ssb) [Pasteurella multocida strain 41060]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGTGTCGCCACAAGCGAAAGTTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGCCGTCAAGCTGAAGTAGCCGGAGAATACCTCCGTAAAGGTTCAAAGGTGTATGTAGAAGGC
CGTCTAAAAACACGCAAATGGCAAGATCAAAACGGGCAAGATCGTTACACCACGGAAATTCAAGGCGATGTGTTACAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTACGCCCCACAAACCGCTGCGCCACAATACAATGCCCCAACTG
GCGGTTATAGCACACAAGCGCCTCGCCCAGCACAAAAACCTGCTCCACAAAACGAACCTCCTGTGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.231

100

0.759
  ssb Vibrio cholerae strain A1552

53.297

100

0.584
  ssb Neisseria meningitidis MC58

43.82

100

0.47
  ssb Neisseria gonorrhoeae MS11

43.82

100

0.47