Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M9415_RS03110 Genome accession   NZ_CP097790
Coordinates   632867..633367 (-) Length   166 a.a.
NCBI ID   WP_005725039.1    Uniprot ID   A0A379BD60
Organism   Pasteurella multocida strain 31971     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 627867..638367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9415_RS03095 (M9415_03095) - 627890..629926 (-) 2037 WP_250249344.1 integrase -
  M9415_RS03100 (M9415_03100) - 629929..631449 (-) 1521 WP_172452382.1 site-specific integrase -
  M9415_RS03105 (M9415_03105) - 631436..632716 (-) 1281 WP_083004546.1 site-specific integrase -
  M9415_RS03110 (M9415_03110) ssb 632867..633367 (-) 501 WP_005725039.1 single-stranded DNA-binding protein Machinery gene
  M9415_RS03115 (M9415_03115) uvrA 633539..636370 (+) 2832 WP_083004550.1 excinuclease ABC subunit UvrA -
  M9415_RS03120 (M9415_03120) sodC 636441..637001 (+) 561 WP_064964961.1 superoxide dismutase family protein -
  M9415_RS03125 (M9415_03125) rlmB 637087..637824 (-) 738 WP_005725044.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18657.68 Da        Isoelectric Point: 5.3353

>NTDB_id=692484 M9415_RS03110 WP_005725039.1 632867..633367(-) (ssb) [Pasteurella multocida strain 31971]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=692484 M9415_RS03110 WP_005725039.1 632867..633367(-) (ssb) [Pasteurella multocida strain 31971]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGTGTCGCCACAAGCGAAAGTTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGCCGTCAAGCTGAAGTAGCCGGAGAATACCTCCGTAAAGGTTCAAAGGTGTATGTAGAAGGC
CGTCTAAAAACACGCAAATGGCAAGATCAAAACGGGCAAGATCGTTACACCACGGAAATTCAAGGCGATGTGTTACAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTACGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTGGCTACGGCGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A379BD60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.231

100

0.759
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47