Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   M9421_RS08605 Genome accession   NZ_CP097788
Coordinates   1832188..1833399 (+) Length   403 a.a.
NCBI ID   WP_250263136.1    Uniprot ID   -
Organism   Pasteurella multocida strain 21317     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1827188..1838399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9421_RS08580 (M9421_08580) - 1827661..1828455 (-) 795 WP_005722415.1 sulfite exporter TauE/SafE family protein -
  M9421_RS08585 (M9421_08585) rppH 1828458..1829054 (-) 597 WP_250262444.1 RNA pyrophosphohydrolase -
  M9421_RS08590 (M9421_08590) ampD 1829640..1830206 (-) 567 WP_083004802.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  M9421_RS08595 (M9421_08595) pilA 1830366..1830800 (+) 435 WP_250262445.1 prepilin peptidase-dependent pilin Machinery gene
  M9421_RS08600 (M9421_08600) pilB 1830800..1832188 (+) 1389 WP_250262446.1 GspE/PulE family protein Machinery gene
  M9421_RS08605 (M9421_08605) pilC 1832188..1833399 (+) 1212 WP_250263136.1 type II secretion system F family protein Machinery gene
  M9421_RS08610 (M9421_08610) - 1833399..1834124 (+) 726 WP_250262447.1 A24 family peptidase -
  M9421_RS08615 (M9421_08615) coaE 1834136..1834747 (+) 612 WP_250262448.1 dephospho-CoA kinase -
  M9421_RS08620 (M9421_08620) yacG 1834767..1834970 (+) 204 WP_241951067.1 DNA gyrase inhibitor YacG -
  M9421_RS08625 (M9421_08625) - 1834970..1835239 (+) 270 WP_005722568.1 GNAT family N-acetyltransferase -
  M9421_RS08630 (M9421_08630) - 1835688..1837061 (+) 1374 WP_250262449.1 sodium:alanine symporter family protein -
  M9421_RS08635 (M9421_08635) raiA 1837306..1837623 (+) 318 WP_005722573.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 46073.04 Da        Isoelectric Point: 9.7777

>NTDB_id=692452 M9421_RS08605 WP_250263136.1 1832188..1833399(+) (pilC) [Pasteurella multocida strain 21317]
MKKLKMFRWKGINRLQQIQKGVIVAESKEIAQQSLLLQGVHQLHLQRNWQLSMQPKYTEICDLLMQLAMLLQASVPLKES
LQLLQRHASNIELTQWLRQLLCSLESGFSFSTALATQDRYLTKQEYQLISVGESTGKLPLVCAQLAKQRQQSLALRRKVQ
KMLFYPMLVLAVTLILTLLLLLFIVPQFAEIYANQPLPAFTVLLLNISTGLRGYAFQLSLLLIFGFIFLMLNVKQRVGLY
RLKNCLLHFIPIFKQISQHHELIHFCRHLHLMLSSGMPLQQALQTFLPTQKSGIAKHALTEMRLAEEVQLMLKGIAQGYT
FSEVIGSNLFPEMSQQMLHVGEQTGRLSEMLQYIAESYQQKLEHQLDLLSQLLEPCLMLVIGSIIGVILLGMYLPMFNMG
ALV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=692452 M9421_RS08605 WP_250263136.1 1832188..1833399(+) (pilC) [Pasteurella multocida strain 21317]
ATGAAAAAATTAAAAATGTTTCGTTGGAAAGGAATAAATCGATTACAACAAATACAAAAAGGCGTTATTGTGGCGGAAAG
TAAAGAGATAGCACAGCAATCTTTATTACTTCAGGGCGTTCACCAACTGCATTTACAACGAAATTGGCAGCTTTCTATGC
AACCTAAATATACAGAGATTTGTGATCTGTTAATGCAATTAGCGATGCTATTACAAGCTTCGGTTCCCTTGAAGGAAAGT
TTACAGCTATTACAGCGACATGCTAGCAATATTGAGTTAACGCAATGGTTACGTCAGTTACTCTGTTCACTTGAAAGTGG
ATTTTCTTTTTCAACCGCGCTAGCCACACAAGATCGTTACTTAACAAAACAGGAATACCAATTAATTTCTGTTGGTGAAT
CGACAGGGAAACTACCACTTGTTTGTGCACAATTAGCGAAACAACGTCAACAATCACTGGCGTTACGGCGCAAAGTTCAG
AAAATGTTGTTTTATCCAATGTTAGTGCTTGCTGTGACATTGATCTTAACATTGTTGTTACTGCTATTTATTGTGCCACA
GTTTGCTGAGATTTATGCAAATCAACCTTTACCTGCGTTTACTGTGTTGTTATTGAATATATCGACAGGGTTACGTGGTT
ATGCTTTTCAATTGAGTCTCCTATTAATTTTCGGCTTCATTTTTTTGATGTTAAATGTGAAACAGCGAGTTGGACTATAT
CGATTAAAAAATTGTCTGCTTCATTTCATTCCCATCTTTAAGCAAATTTCGCAACATCACGAGCTTATTCATTTTTGTCG
TCATTTACATCTTATGCTCAGCTCGGGCATGCCTTTACAACAGGCATTACAGACTTTTTTACCTACACAGAAAAGTGGTA
TAGCAAAACACGCGCTTACCGAGATGCGACTTGCTGAAGAAGTCCAATTAATGTTAAAGGGAATTGCTCAAGGTTATACG
TTTTCTGAAGTTATCGGCTCCAACTTATTTCCGGAGATGTCACAACAGATGTTACATGTTGGTGAACAGACAGGGCGATT
AAGCGAAATGTTGCAGTATATAGCAGAAAGTTATCAACAAAAGTTAGAGCACCAACTTGATTTACTTTCACAATTATTGG
AACCCTGTTTAATGTTAGTGATTGGTTCGATTATTGGCGTCATTTTATTGGGCATGTATTTACCTATGTTTAATATGGGG
GCATTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(265-395)

Type II secretion system (T2SS), protein F (T2SSF)

(64-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

48.395

100

0.486
  pilC Haemophilus influenzae 86-028NP

48.148

100

0.484
  pilC Glaesserella parasuis strain SC1401

39.506

100

0.397