Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M9421_RS07850 Genome accession   NZ_CP097788
Coordinates   1645712..1646212 (-) Length   166 a.a.
NCBI ID   WP_250262376.1    Uniprot ID   -
Organism   Pasteurella multocida strain 21317     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1640712..1651212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9421_RS07815 (M9421_07815) - 1640769..1641200 (-) 432 WP_250262371.1 hypothetical protein -
  M9421_RS07820 (M9421_07820) - 1641212..1642246 (-) 1035 Protein_1500 IS1595 family transposase -
  M9421_RS07825 (M9421_07825) - 1642350..1642688 (+) 339 WP_250262372.1 helix-turn-helix transcriptional regulator -
  M9421_RS07830 (M9421_07830) - 1642761..1643327 (+) 567 WP_250262373.1 hypothetical protein -
  M9421_RS07835 (M9421_07835) - 1643333..1643701 (+) 369 WP_250262374.1 hypothetical protein -
  M9421_RS07840 (M9421_07840) - 1643720..1644154 (+) 435 WP_250262375.1 protein-export chaperone SecB -
  M9421_RS07845 (M9421_07845) - 1644300..1645211 (+) 912 Protein_1505 IS1595 family transposase -
  M9421_RS07850 (M9421_07850) ssb 1645712..1646212 (-) 501 WP_250262376.1 single-stranded DNA-binding protein Machinery gene
  M9421_RS07855 (M9421_07855) uvrA 1646384..1649215 (+) 2832 WP_250262377.1 excinuclease ABC subunit UvrA -
  M9421_RS07860 (M9421_07860) sodC 1649286..1649846 (+) 561 WP_005725042.1 superoxide dismutase family protein -
  M9421_RS07865 (M9421_07865) rlmB 1649932..1650669 (-) 738 WP_126417660.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18697.74 Da        Isoelectric Point: 5.3353

>NTDB_id=692445 M9421_RS07850 WP_250262376.1 1645712..1646212(-) (ssb) [Pasteurella multocida strain 21317]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEIAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTPAPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=692445 M9421_RS07850 WP_250262376.1 1645712..1646212(-) (ssb) [Pasteurella multocida strain 21317]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGTGTCGCCACAAGCGAAAGTTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAATAGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAAGGG
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTACACTACCGAAATCCAAGGCGACGTGTTACAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTACGCCCCACAAACCCCTGCGCCACAATATAATGCCCCAACAG
GTGGCTACGGCGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCCCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.399

100

0.765
  ssb Vibrio cholerae strain A1552

52.747

100

0.578
  ssb Neisseria meningitidis MC58

44.886

100

0.476
  ssb Neisseria gonorrhoeae MS11

44.886

100

0.476