Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M9411_RS02730 Genome accession   NZ_CP097787
Coordinates   600527..601027 (+) Length   166 a.a.
NCBI ID   WP_010907419.1    Uniprot ID   -
Organism   Pasteurella multocida strain 38725     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 595527..606027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9411_RS02715 (M9411_02715) rlmB 596070..596807 (+) 738 WP_005725044.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  M9411_RS02720 (M9411_02720) sodC 596893..597453 (-) 561 WP_005725042.1 superoxide dismutase family protein -
  M9411_RS02725 (M9411_02725) uvrA 597524..600355 (-) 2832 WP_250252320.1 excinuclease ABC subunit UvrA -
  M9411_RS02730 (M9411_02730) ssb 600527..601027 (+) 501 WP_010907419.1 single-stranded DNA-binding protein Machinery gene
  M9411_RS02735 (M9411_02735) - 601234..601464 (-) 231 WP_240266426.1 hypothetical protein -
  M9411_RS02740 (M9411_02740) folD 601534..602388 (-) 855 WP_156732384.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  M9411_RS02755 (M9411_02755) - 603031..603450 (+) 420 WP_005719426.1 DUF417 family protein -
  M9411_RS02760 (M9411_02760) lipA 603528..604490 (-) 963 WP_005719422.1 lipoyl synthase -
  M9411_RS02765 (M9411_02765) lipB 604555..605211 (-) 657 WP_074865992.1 lipoyl(octanoyl) transferase LipB -
  M9411_RS02770 (M9411_02770) ybeD 605218..605514 (-) 297 WP_005719420.1 DUF493 family protein YbeD -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18687.70 Da        Isoelectric Point: 5.3353

>NTDB_id=692414 M9411_RS02730 WP_010907419.1 600527..601027(+) (ssb) [Pasteurella multocida strain 38725]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGSYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=692414 M9411_RS02730 WP_010907419.1 600527..601027(+) (ssb) [Pasteurella multocida strain 38725]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGGAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAAGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTACACTACCGAGATCCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTAGCTACGGTGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

68.681

100

0.753
  ssb Vibrio cholerae strain A1552

54.144

100

0.59
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47