Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MF627_RS21075 Genome accession   NZ_CP097769
Coordinates   4632894..4633385 (-) Length   163 a.a.
NCBI ID   WP_013312801.1    Uniprot ID   A0A0M1Q500
Organism   Paenibacillus polymyxa strain R 4.24     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4627894..4638385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF627_RS21055 (MF627_004180) opp4C 4628368..4629291 (-) 924 WP_250267086.1 oligopeptide ABC transporter permease -
  MF627_RS21060 (MF627_004181) - 4629303..4630265 (-) 963 WP_061830440.1 ABC transporter permease -
  MF627_RS21065 (MF627_004182) - 4630334..4632073 (-) 1740 WP_165178321.1 ABC transporter substrate-binding protein -
  MF627_RS21070 (MF627_004183) rpsR 4632600..4632872 (-) 273 WP_013312800.1 30S ribosomal protein S18 -
  MF627_RS21075 (MF627_004184) ssbA 4632894..4633385 (-) 492 WP_013312801.1 single-stranded DNA-binding protein Machinery gene
  MF627_RS21080 (MF627_004185) rpsF 4633435..4633719 (-) 285 WP_013312802.1 30S ribosomal protein S6 -
  MF627_RS21085 (MF627_004186) - 4634051..4634245 (+) 195 WP_013312803.1 YjzC family protein -
  MF627_RS21090 (MF627_004187) - 4634612..4634929 (+) 318 WP_013312804.1 hypothetical protein -
  MF627_RS21095 (MF627_004188) - 4635009..4635374 (-) 366 WP_250267087.1 hypothetical protein -
  MF627_RS21100 (MF627_004189) - 4635536..4635748 (+) 213 WP_250267089.1 helix-turn-helix domain-containing protein -
  MF627_RS21105 (MF627_004190) - 4636481..4637152 (+) 672 WP_250267090.1 hypothetical protein -
  MF627_RS26310 - 4637683..4637862 (-) 180 WP_416381815.1 putative holin-like toxin -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17852.55 Da        Isoelectric Point: 4.8369

>NTDB_id=692150 MF627_RS21075 WP_013312801.1 4632894..4633385(-) (ssbA) [Paenibacillus polymyxa strain R 4.24]
MLNRVILIGRLTKDPELRYTPSGVAVTQFTLAVDRPFTSQGGEREADFLPIVTWRQLAETCANYLRKGRLTAVEGRVQVR
NYENNEGKRVYVTEIVADNVRFLESNRDGGNGGGNSGGAAREESPFGGGNSNSGRGNNNSRNNQDPFSDDGKPIDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=692150 MF627_RS21075 WP_013312801.1 4632894..4633385(-) (ssbA) [Paenibacillus polymyxa strain R 4.24]
TTGTTGAACCGTGTCATTCTGATCGGTCGTTTGACCAAAGATCCAGAGCTGCGTTATACACCGTCTGGTGTAGCAGTAAC
CCAGTTCACCCTGGCTGTAGACCGTCCGTTTACGAGTCAAGGCGGCGAACGGGAAGCGGATTTCTTGCCGATCGTAACCT
GGCGTCAGCTTGCTGAAACATGCGCTAACTATCTTCGCAAAGGTCGTTTAACGGCTGTTGAAGGCCGTGTTCAGGTGCGT
AATTATGAGAACAATGAAGGAAAACGTGTATACGTGACTGAAATTGTAGCTGATAATGTGCGTTTCTTGGAATCTAACCG
CGATGGCGGTAACGGTGGCGGCAATAGCGGTGGAGCTGCGCGTGAGGAGTCTCCTTTCGGAGGCGGTAACAGCAATAGTG
GACGCGGGAATAATAACTCGCGAAACAATCAGGATCCTTTTTCTGATGACGGAAAACCGATCGATATTTCGGATGATGAT
TTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1Q500

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.382

100

0.62
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.528
  ssb Neisseria meningitidis MC58

35.165

100

0.393
  ssb Neisseria gonorrhoeae MS11

34.078

100

0.374