Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MF628_RS12850 Genome accession   NZ_CP097767
Coordinates   2728181..2728672 (+) Length   163 a.a.
NCBI ID   WP_013312801.1    Uniprot ID   A0A0M1Q500
Organism   Paenibacillus polymyxa strain R 5.31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2723181..2733672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF628_RS12810 (MF628_002552) - 2723763..2724284 (+) 522 WP_013312808.1 DUF4446 family protein -
  MF628_RS12815 (MF628_002553) yyaC 2724238..2724843 (-) 606 WP_250273623.1 spore protease YyaC -
  MF628_RS12820 (MF628_002554) - 2725095..2726045 (+) 951 WP_250273624.1 mechanosensitive ion channel family protein -
  MF628_RS12825 (MF628_002555) - 2726035..2726259 (+) 225 WP_025723137.1 DUF951 domain-containing protein -
  MF628_RS12835 (MF628_002557) - 2726651..2726968 (-) 318 WP_029518959.1 hypothetical protein -
  MF628_RS12840 (MF628_002558) - 2727335..2727529 (-) 195 WP_013312803.1 YjzC family protein -
  MF628_RS12845 (MF628_002559) rpsF 2727847..2728131 (+) 285 WP_013312802.1 30S ribosomal protein S6 -
  MF628_RS12850 (MF628_002560) ssbA 2728181..2728672 (+) 492 WP_013312801.1 single-stranded DNA-binding protein Machinery gene
  MF628_RS12855 (MF628_002561) rpsR 2728694..2728966 (+) 273 WP_013312800.1 30S ribosomal protein S18 -
  MF628_RS12860 (MF628_002562) - 2729490..2731229 (+) 1740 WP_250273625.1 ABC transporter substrate-binding protein -
  MF628_RS12865 (MF628_002563) - 2731298..2732260 (+) 963 WP_250273626.1 ABC transporter permease -
  MF628_RS12870 (MF628_002564) opp4C 2732272..2733195 (+) 924 WP_013312797.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17852.55 Da        Isoelectric Point: 4.8369

>NTDB_id=692103 MF628_RS12850 WP_013312801.1 2728181..2728672(+) (ssbA) [Paenibacillus polymyxa strain R 5.31]
MLNRVILIGRLTKDPELRYTPSGVAVTQFTLAVDRPFTSQGGEREADFLPIVTWRQLAETCANYLRKGRLTAVEGRVQVR
NYENNEGKRVYVTEIVADNVRFLESNRDGGNGGGNSGGAAREESPFGGGNSNSGRGNNNSRNNQDPFSDDGKPIDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=692103 MF628_RS12850 WP_013312801.1 2728181..2728672(+) (ssbA) [Paenibacillus polymyxa strain R 5.31]
TTGTTGAACCGTGTCATTCTGATCGGTCGTTTGACCAAAGATCCAGAGCTGCGCTATACACCGTCTGGTGTAGCAGTAAC
CCAGTTCACCCTGGCTGTAGACCGTCCGTTTACGAGTCAAGGCGGCGAACGGGAAGCGGATTTCTTGCCGATCGTAACCT
GGCGTCAGCTTGCTGAAACATGCGCTAACTATCTTCGCAAAGGTCGTTTAACGGCTGTTGAAGGCCGTGTTCAGGTGCGT
AATTATGAGAACAATGAAGGAAAACGTGTATACGTGACTGAAATTGTAGCTGATAATGTGCGTTTCTTGGAATCTAACCG
CGATGGCGGTAACGGTGGCGGCAATAGCGGTGGAGCTGCGCGTGAGGAGTCTCCTTTCGGAGGCGGTAACAGCAATAGTG
GACGCGGGAATAATAACTCGCGAAACAATCAGGATCCTTTTTCCGATGACGGAAAACCGATCGATATTTCGGATGATGAT
TTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1Q500

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.382

100

0.62
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.528
  ssb Neisseria meningitidis MC58

35.165

100

0.393
  ssb Neisseria gonorrhoeae MS11

34.078

100

0.374