Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M8855_RS06460 Genome accession   NZ_CP097620
Coordinates   1413966..1414466 (+) Length   166 a.a.
NCBI ID   WP_005719438.1    Uniprot ID   A0A9X3URY5
Organism   Pasteurella multocida strain P2192     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1408966..1419466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8855_RS06445 (M8855_06445) rlmB 1409509..1410246 (+) 738 WP_249984081.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  M8855_RS06450 (M8855_06450) sodC 1410332..1410892 (-) 561 WP_005725042.1 superoxide dismutase family protein -
  M8855_RS06455 (M8855_06455) uvrA 1410963..1413794 (-) 2832 WP_010907420.1 excinuclease ABC subunit UvrA -
  M8855_RS06460 (M8855_06460) ssb 1413966..1414466 (+) 501 WP_005719438.1 single-stranded DNA-binding protein Machinery gene
  M8855_RS06465 (M8855_06465) - 1414610..1415896 (+) 1287 WP_005631039.1 site-specific integrase -
  M8855_RS06470 (M8855_06470) - 1415883..1417403 (+) 1521 WP_010907418.1 site-specific integrase -
  M8855_RS06475 (M8855_06475) - 1417406..1419442 (+) 2037 WP_010907417.1 integrase -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18673.68 Da        Isoelectric Point: 5.3353

>NTDB_id=691304 M8855_RS06460 WP_005719438.1 1413966..1414466(+) (ssb) [Pasteurella multocida strain P2192]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTASPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=691304 M8855_RS06460 WP_005719438.1 1413966..1414466(+) (ssb) [Pasteurella multocida strain P2192]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGGAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGTCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAGGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGACCGCTACACTACCGAGATCCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTTCGCCACAATATAATGCCCCAACAG
GTGGATACGGCGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.231

100

0.759
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47