Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   M8854_RS09185 Genome accession   NZ_CP097618
Coordinates   1973602..1974723 (+) Length   373 a.a.
NCBI ID   WP_059245855.1    Uniprot ID   -
Organism   Pasteurella multocida strain P2095     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1968602..1979723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8854_RS09165 (M8854_09165) napG 1970781..1971533 (+) 753 WP_005718376.1 ferredoxin-type protein NapG -
  M8854_RS09170 (M8854_09170) napH 1971533..1972408 (+) 876 WP_005757794.1 quinol dehydrogenase ferredoxin subunit NapH -
  M8854_RS09175 (M8854_09175) - 1972414..1972839 (+) 426 WP_005718380.1 nitrate reductase cytochrome c-type subunit -
  M8854_RS09180 (M8854_09180) - 1972855..1973448 (+) 594 WP_059245854.1 cytochrome c3 family protein -
  M8854_RS09185 (M8854_09185) dprA 1973602..1974723 (+) 1122 WP_059245855.1 DNA-processing protein DprA Machinery gene
  M8854_RS09190 (M8854_09190) lptD 1974829..1977177 (-) 2349 WP_059245856.1 LPS assembly protein LptD -
  M8854_RS09195 (M8854_09195) - 1977241..1977792 (-) 552 WP_005724442.1 DNA-3-methyladenine glycosylase I -
  M8854_RS09200 (M8854_09200) tal 1977950..1978903 (+) 954 WP_059245857.1 transaldolase -

Sequence


Protein


Download         Length: 373 a.a.        Molecular weight: 41667.77 Da        Isoelectric Point: 5.9993

>NTDB_id=691291 M8854_RS09185 WP_059245855.1 1973602..1974723(+) (dprA) [Pasteurella multocida strain P2095]
MSSYLPLLLRLLQIPRLGSLAIQRLLEHVSPAELMEYDTKAFQQIGWTAQQIQRWFTPENRYIDPALAWVNEQQHIVDWF
DPHYPPLLKQTEGAPLVLFVKGEVDTLSAQQVAIVGSRHCSRYGEYWANYFATQLAYADIVVTSGLALGIDGFSHQAVVD
IHGKTIAVLGSGLEVIYPKKHRGLAEKIIEHQGVLVSEFLPFQPPVAENFPRRNRIISGLSLGTLVIEASEHSGSLITAR
YALEQNRDVFALPGQIQHGFSQGCHKLIKQGAILVESIQDILEHLSPYSHCAMPALPRTENAFSQQVTDTSTINTARITP
EHPELYAQIGYMPVSIDVLAQQVNLPVDTLLVQLLTLELQDLIVAENGLYQRK

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=691291 M8854_RS09185 WP_059245855.1 1973602..1974723(+) (dprA) [Pasteurella multocida strain P2095]
ATGTCATCTTATCTGCCTCTTTTATTACGTTTGTTACAAATTCCGCGTTTGGGTTCGCTGGCGATCCAGCGTTTATTGGA
GCACGTCAGTCCAGCGGAATTAATGGAATATGATACAAAAGCCTTTCAACAGATAGGCTGGACGGCACAGCAGATTCAGC
GTTGGTTTACGCCTGAGAACCGTTATATTGATCCCGCGTTAGCCTGGGTAAACGAACAACAACATATTGTGGATTGGTTT
GATCCTCATTATCCTCCCTTGTTAAAGCAAACAGAAGGGGCACCACTTGTCTTGTTTGTGAAAGGGGAAGTGGATACGCT
ATCTGCACAGCAAGTGGCGATCGTGGGCAGTCGTCATTGTTCGCGTTATGGGGAATACTGGGCAAACTATTTCGCCACCC
AACTGGCTTATGCCGATATTGTGGTGACCAGTGGTTTAGCGTTAGGTATTGATGGTTTCTCACATCAAGCAGTGGTGGAT
ATCCACGGGAAGACGATTGCAGTATTAGGCAGTGGTTTAGAGGTCATTTATCCGAAAAAACACCGAGGTTTAGCCGAAAA
AATTATTGAACATCAAGGTGTGTTAGTGTCTGAATTTTTACCTTTCCAACCCCCTGTGGCAGAAAATTTTCCACGTCGTA
ATCGCATTATTAGTGGTTTATCTTTGGGGACATTAGTCATTGAAGCCTCAGAACACAGTGGTTCTTTAATTACTGCCCGC
TATGCTTTAGAGCAAAATCGAGATGTTTTTGCATTACCGGGGCAGATTCAGCATGGATTTAGCCAAGGTTGTCATAAACT
GATTAAACAGGGGGCAATATTAGTCGAAAGTATTCAGGATATTTTAGAACATCTCTCGCCTTATTCGCATTGTGCCATGC
CAGCGTTGCCTCGTACGGAGAACGCCTTTTCTCAACAGGTAACAGACACATCAACCATCAATACTGCGCGGATAACGCCA
GAACATCCGGAATTATATGCCCAAATTGGCTATATGCCCGTCAGTATTGATGTATTAGCCCAACAAGTCAATTTACCTGT
TGATACCTTATTAGTACAGCTTTTAACCTTGGAATTGCAAGACTTGATTGTTGCTGAAAATGGATTATATCAGCGTAAAT
AA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Haemophilus influenzae Rd KW20

60.541

99.196

0.601

  dprA Glaesserella parasuis strain SC1401

53.143

93.834

0.499

  dprA Vibrio cholerae strain A1552

45.455

100

0.456

  dprA Vibrio campbellii strain DS40M4

45.135

99.196

0.448

  dprA Legionella pneumophila strain ERS1305867

39.623

99.464

0.394