Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M8854_RS06970 Genome accession   NZ_CP097618
Coordinates   1504062..1504562 (+) Length   166 a.a.
NCBI ID   WP_064964959.1    Uniprot ID   -
Organism   Pasteurella multocida strain P2095     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1499062..1509562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8854_RS06955 (M8854_06955) rlmB 1499605..1500342 (+) 738 WP_064964962.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  M8854_RS06960 (M8854_06960) sodC 1500428..1500988 (-) 561 WP_064964961.1 superoxide dismutase family protein -
  M8854_RS06965 (M8854_06965) uvrA 1501059..1503890 (-) 2832 WP_064964960.1 excinuclease ABC subunit UvrA -
  M8854_RS06970 (M8854_06970) ssb 1504062..1504562 (+) 501 WP_064964959.1 single-stranded DNA-binding protein Machinery gene
  M8854_RS06975 (M8854_06975) folD 1505068..1505922 (-) 855 WP_046333499.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  M8854_RS06990 (M8854_06990) - 1506565..1506984 (+) 420 WP_005719426.1 DUF417 family protein -
  M8854_RS06995 (M8854_06995) lipA 1507062..1508024 (-) 963 WP_059245730.1 lipoyl synthase -
  M8854_RS07000 (M8854_07000) lipB 1508089..1508745 (-) 657 WP_059245729.1 lipoyl(octanoyl) transferase LipB -
  M8854_RS07005 (M8854_07005) ybeD 1508752..1509048 (-) 297 WP_005719420.1 DUF493 family protein YbeD -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18696.69 Da        Isoelectric Point: 5.3353

>NTDB_id=691283 M8854_RS06970 WP_064964959.1 1504062..1504562(+) (ssb) [Pasteurella multocida strain P2095]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYSTQAPRPAQKPAPQNEPPVDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=691283 M8854_RS06970 WP_064964959.1 1504062..1504562(+) (ssb) [Pasteurella multocida strain P2095]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGTGTCGCCACAAGCGAAAGTTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGCCGTCAAGCTGAAGTAGCCGGAGAATACCTCCGTAAAGGTTCAAAGGTGTATGTAGAAGGC
CGTCTAAAAACACGCAAATGGCAAGATCAAAACGGGCAAGATCGTTACACCACGGAAATTCAAGGCGATGTGTTACAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTACGCCCCACAAACCGCTGCGCCACAATACAATGCCCCAACTG
GCGGTTATAGCACACAAGCGCCTCGCCCAGCACAAAAACCTGCTCCACAAAACGAACCTCCTGTGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.231

100

0.759
  ssb Vibrio cholerae strain A1552

53.297

100

0.584
  ssb Neisseria meningitidis MC58

43.82

100

0.47
  ssb Neisseria gonorrhoeae MS11

43.82

100

0.47