Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   M8852_RS05760 Genome accession   NZ_CP097614
Coordinates   1242245..1243456 (-) Length   403 a.a.
NCBI ID   WP_096743229.1    Uniprot ID   -
Organism   Pasteurella multocida strain P1581     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1237245..1248456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8852_RS05730 (M8852_05730) raiA 1238021..1238338 (-) 318 WP_005722573.1 ribosome-associated translation inhibitor RaiA -
  M8852_RS05735 (M8852_05735) - 1238583..1239956 (-) 1374 WP_115097848.1 sodium:alanine symporter family protein -
  M8852_RS05740 (M8852_05740) - 1240405..1240674 (-) 270 WP_005722568.1 GNAT family N-acetyltransferase -
  M8852_RS05745 (M8852_05745) yacG 1240674..1240877 (-) 204 WP_083004817.1 DNA gyrase inhibitor YacG -
  M8852_RS05750 (M8852_05750) coaE 1240888..1241508 (-) 621 WP_115097849.1 dephospho-CoA kinase -
  M8852_RS05755 (M8852_05755) - 1241520..1242245 (-) 726 WP_096743228.1 A24 family peptidase -
  M8852_RS05760 (M8852_05760) pilC 1242245..1243456 (-) 1212 WP_096743229.1 type II secretion system F family protein Machinery gene
  M8852_RS05765 (M8852_05765) pilB 1243456..1244844 (-) 1389 WP_115097850.1 GspE/PulE family protein Machinery gene
  M8852_RS05770 (M8852_05770) pilA 1244844..1245278 (-) 435 WP_115097851.1 prepilin peptidase-dependent pilin Machinery gene
  M8852_RS05775 (M8852_05775) ampD 1245438..1246004 (+) 567 WP_104227618.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  M8852_RS05780 (M8852_05780) rppH 1246590..1247186 (+) 597 WP_115097852.1 RNA pyrophosphohydrolase -
  M8852_RS05785 (M8852_05785) - 1247189..1247983 (+) 795 WP_115097853.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 46156.13 Da        Isoelectric Point: 9.7864

>NTDB_id=691235 M8852_RS05760 WP_096743229.1 1242245..1243456(-) (pilC) [Pasteurella multocida strain P1581]
MKKLKMFRWKGINRLQQIQKGVIVAESKEIAQQSLLLQGVHQLHLQRNWQFSMQPKYTEICDLLMQLAMLLQASVPLKES
LQLLQRHASHIELTQWLRQLLCSLESGFSFSTALATQDRYLTKQEYQLISVGESTGKLPLVCTQLAKQRQQSLALRRKVQ
KMLFYPMLVLAVTLILTLLLLLFIVPQFAEIYANQPLPAFTVLLLNISTGLRGYAFQLSLLLIFGFIFLMLNVRQRVGLY
RLKNCLLHFIPIFKQIAQHHELIHFCRHLHLMLSSGMPLQQALQTFLPTQKSGIAKHALTEMRLAEEVQLMLKGIAQGYT
FSEVIGSNLFPEMAQQMLHVGEQTGRLSEMLQYIAESYQQKLEHQLDLLSQLLEPCLMLVIGSIIGVILLGMYLPMFNMG
ALV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=691235 M8852_RS05760 WP_096743229.1 1242245..1243456(-) (pilC) [Pasteurella multocida strain P1581]
ATGAAAAAATTAAAAATGTTTCGTTGGAAAGGAATAAATCGATTACAACAAATACAAAAAGGCGTTATTGTGGCGGAAAG
TAAAGAGATAGCACAGCAATCTTTATTACTTCAGGGCGTTCACCAACTGCATTTACAACGAAATTGGCAGTTTTCTATGC
AACCTAAATATACAGAGATTTGTGATCTGTTAATGCAATTAGCGATGCTATTACAAGCTTCGGTTCCCTTGAAGGAAAGT
TTACAGCTATTACAGCGACATGCTAGCCATATTGAGTTAACGCAATGGTTACGTCAGTTACTCTGTTCACTCGAAAGTGG
ATTTTCTTTTTCAACCGCGCTAGCTACACAAGATCGTTACTTAACAAAACAGGAATACCAATTAATTTCTGTTGGTGAAT
CGACAGGGAAACTACCACTTGTTTGTACACAATTAGCGAAACAACGTCAACAATCACTGGCGTTACGGCGCAAAGTTCAG
AAAATGTTGTTTTATCCAATGTTAGTGCTTGCTGTGACATTGATCTTAACATTGTTGTTACTGCTATTTATTGTGCCACA
GTTTGCTGAGATTTATGCAAATCAACCTTTACCTGCGTTTACTGTGTTGTTATTGAATATATCGACAGGGTTACGTGGTT
ATGCTTTTCAATTGAGTCTCCTATTAATTTTCGGCTTCATTTTTTTGATGTTAAATGTGAGACAGCGAGTTGGACTATAT
CGATTAAAAAATTGTCTGCTTCATTTCATTCCCATCTTTAAGCAAATTGCGCAACATCACGAGCTTATTCATTTTTGTCG
TCATTTACATCTTATGCTCAGCTCGGGCATGCCTTTACAACAGGCATTGCAGACTTTTTTACCTACACAGAAAAGTGGTA
TAGCAAAACACGCGCTTACCGAGATGCGACTTGCTGAAGAAGTCCAATTAATGTTAAAGGGAATTGCTCAAGGTTATACG
TTTTCTGAAGTTATCGGCTCCAACTTATTTCCGGAGATGGCACAACAGATGTTACATGTTGGTGAACAGACAGGGCGATT
AAGCGAAATGTTGCAGTATATAGCAGAAAGTTATCAACAAAAGTTAGAGCACCAACTTGATTTACTTTCACAATTATTGG
AACCCTGTTTAATGTTAGTGATTGGTTCGATTATTGGCGTCATTTTATTGGGCATGTATCTACCTATGTTTAATATGGGG
GCATTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(265-395)

Type II secretion system (T2SS), protein F (T2SSF)

(64-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

48.642

100

0.489
  pilC Haemophilus influenzae 86-028NP

48.395

100

0.486
  pilC Glaesserella parasuis strain SC1401

39.012

100

0.392