Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M8849_RS06465 Genome accession   NZ_CP097609
Coordinates   1434561..1435061 (+) Length   166 a.a.
NCBI ID   WP_005719438.1    Uniprot ID   A0A9X3URY5
Organism   Pasteurella multocida strain 11245     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1429561..1440061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8849_RS06450 (M8849_06450) rlmB 1430105..1430842 (+) 738 WP_169029437.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  M8849_RS06455 (M8849_06455) sodC 1430927..1431487 (-) 561 WP_005725042.1 superoxide dismutase family protein -
  M8849_RS06460 (M8849_06460) uvrA 1431558..1434389 (-) 2832 WP_169029436.1 excinuclease ABC subunit UvrA -
  M8849_RS06465 (M8849_06465) ssb 1434561..1435061 (+) 501 WP_005719438.1 single-stranded DNA-binding protein Machinery gene
  M8849_RS06470 (M8849_06470) folD 1435567..1436421 (-) 855 WP_169029435.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  M8849_RS06485 (M8849_06485) - 1437064..1437483 (+) 420 WP_005719426.1 DUF417 family protein -
  M8849_RS06490 (M8849_06490) lipA 1437561..1438523 (-) 963 WP_005719422.1 lipoyl synthase -
  M8849_RS06495 (M8849_06495) lipB 1438588..1439244 (-) 657 WP_005725032.1 lipoyl(octanoyl) transferase LipB -
  M8849_RS06500 (M8849_06500) ybeD 1439251..1439547 (-) 297 WP_005719420.1 DUF493 family protein YbeD -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18673.68 Da        Isoelectric Point: 5.3353

>NTDB_id=691175 M8849_RS06465 WP_005719438.1 1434561..1435061(+) (ssb) [Pasteurella multocida strain 11245]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTASPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=691175 M8849_RS06465 WP_005719438.1 1434561..1435061(+) (ssb) [Pasteurella multocida strain 11245]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGGAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGTCAAGCTGAAGTGGCTGGGGAATATCTACGTAAAGGTTCAAAAGTGTATGTAGAGGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGACCGCTACACTACCGAGATCCAAGGCGACGTGTTACAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTTCGCCACAATATAATGCCCCAACAG
GTGGCTACGGTGCGCAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.231

100

0.759
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47