Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M8848_RS06525 Genome accession   NZ_CP097608
Coordinates   1432153..1432653 (+) Length   166 a.a.
NCBI ID   WP_005725039.1    Uniprot ID   A0A379BD60
Organism   Pasteurella multocida strain 11205     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1427153..1437653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8848_RS06510 (M8848_06510) rlmB 1427697..1428434 (+) 738 WP_005725044.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  M8848_RS06515 (M8848_06515) sodC 1428519..1429079 (-) 561 WP_005725042.1 superoxide dismutase family protein -
  M8848_RS06520 (M8848_06520) uvrA 1429150..1431981 (-) 2832 WP_014668303.1 excinuclease ABC subunit UvrA -
  M8848_RS06525 (M8848_06525) ssb 1432153..1432653 (+) 501 WP_005725039.1 single-stranded DNA-binding protein Machinery gene
  M8848_RS06530 (M8848_06530) qatD 1433513..1434244 (-) 732 WP_005752666.1 Qat anti-phage system TatD family nuclease QatD -
  M8848_RS06535 (M8848_06535) qatC 1434241..1435572 (-) 1332 WP_231115276.1 Qat anti-phage system QueC-like protein QatC -
  M8848_RS06540 (M8848_06540) - 1435557..1436297 (-) 741 WP_005752670.1 hypothetical protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18657.68 Da        Isoelectric Point: 5.3353

>NTDB_id=691153 M8848_RS06525 WP_005725039.1 1432153..1432653(+) (ssb) [Pasteurella multocida strain 11205]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=691153 M8848_RS06525 WP_005725039.1 1432153..1432653(+) (ssb) [Pasteurella multocida strain 11205]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGGAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGCCGTCAAGCTGAAGTAGCCGGAGAATACCTCCGTAAAGGTTCAAAGGTGTATGTAGAAGGC
CGTCTAAAAACACGCAAATGGCAAGATCAAAACGGGCAAGATCGTTACACCACGGAAATTCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTGGCTACGGCGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A379BD60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.231

100

0.759
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47