Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M8847_RS06490 Genome accession   NZ_CP097607
Coordinates   1452306..1452806 (+) Length   166 a.a.
NCBI ID   WP_005725039.1    Uniprot ID   A0A379BD60
Organism   Pasteurella multocida strain 11020     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1447306..1457806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8847_RS06475 (M8847_06475) rlmB 1447850..1448587 (+) 738 WP_250192733.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  M8847_RS06480 (M8847_06480) sodC 1448672..1449232 (-) 561 WP_005725042.1 superoxide dismutase family protein -
  M8847_RS06485 (M8847_06485) uvrA 1449303..1452134 (-) 2832 WP_250192734.1 excinuclease ABC subunit UvrA -
  M8847_RS06490 (M8847_06490) ssb 1452306..1452806 (+) 501 WP_005725039.1 single-stranded DNA-binding protein Machinery gene
  M8847_RS06495 (M8847_06495) qatD 1453666..1454397 (-) 732 WP_005752666.1 Qat anti-phage system TatD family nuclease QatD -
  M8847_RS06500 (M8847_06500) qatC 1454394..1455710 (-) 1317 WP_046333966.1 Qat anti-phage system QueC-like protein QatC -
  M8847_RS06505 (M8847_06505) - 1455710..1456450 (-) 741 WP_005752670.1 hypothetical protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18657.68 Da        Isoelectric Point: 5.3353

>NTDB_id=691131 M8847_RS06490 WP_005725039.1 1452306..1452806(+) (ssb) [Pasteurella multocida strain 11020]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=691131 M8847_RS06490 WP_005725039.1 1452306..1452806(+) (ssb) [Pasteurella multocida strain 11020]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGGAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAAGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGACCGCTACACTACCGAGATCCAAGGCGACGTGTTACAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTACGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTGGCTACGGTGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A379BD60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.231

100

0.759
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47