Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   D8S83_RS01645 Genome accession   NZ_AP018349
Coordinates   363407..363910 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain GN1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 358407..368910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8S83_RS01610 - 359347..360192 (+) 846 WP_042908629.1 ParB/RepB/Spo0J family partition protein -
  D8S83_RS01615 - 360346..361227 (+) 882 WP_020976953.1 mechanosensitive ion channel family protein -
  D8S83_RS01620 - 361257..361460 (+) 204 WP_000157346.1 DUF951 domain-containing protein -
  D8S83_RS01625 ychF 361472..362569 (+) 1098 WP_020976954.1 redox-regulated ATPase YchF -
  D8S83_RS01630 - 362655..362846 (-) 192 WP_001052483.1 hypothetical protein -
  D8S83_RS01640 rpsF 363090..363386 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  D8S83_RS01645 ssbA 363407..363910 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  D8S83_RS01650 rpsR 363962..364204 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  D8S83_RS01655 - 364478..365416 (-) 939 WP_078064570.1 Abi family protein -
  D8S83_RS14365 - 365455..366170 (-) 716 Protein_318 site-specific integrase -
  D8S83_RS01670 selX 366376..366987 (+) 612 WP_020976955.1 staphylococcal enterotoxin-like toxin X -
  D8S83_RS01675 - 367356..367724 (+) 369 WP_000849161.1 YxeA family protein -
  D8S83_RS01680 - 367905..368477 (+) 573 WP_000769722.1 PepSY domain-containing protein -
  D8S83_RS01685 - 368615..368878 (-) 264 WP_001055897.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=69108 D8S83_RS01645 WP_000934799.1 363407..363910(+) (ssbA) [Staphylococcus aureus strain GN1]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=69108 D8S83_RS01645 WP_000934799.1 363407..363910(+) (ssbA) [Staphylococcus aureus strain GN1]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment