Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   M8331_RS06025 Genome accession   NZ_CP097604
Coordinates   1284390..1285601 (-) Length   403 a.a.
NCBI ID   WP_083004809.1    Uniprot ID   -
Organism   Pasteurella multocida strain 10159     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1279390..1290601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8331_RS05995 (M8331_05995) raiA 1280166..1280483 (-) 318 WP_005722573.1 ribosome-associated translation inhibitor RaiA -
  M8331_RS06000 (M8331_06000) - 1280728..1282101 (-) 1374 WP_083004820.1 sodium:alanine symporter family protein -
  M8331_RS06005 (M8331_06005) - 1282550..1282819 (-) 270 WP_250190736.1 GNAT family N-acetyltransferase -
  M8331_RS06010 (M8331_06010) yacG 1282819..1283022 (-) 204 WP_083004817.1 DNA gyrase inhibitor YacG -
  M8331_RS06015 (M8331_06015) coaE 1283033..1283653 (-) 621 WP_083004815.1 dephospho-CoA kinase -
  M8331_RS06020 (M8331_06020) - 1283665..1284390 (-) 726 WP_083004812.1 A24 family peptidase -
  M8331_RS06025 (M8331_06025) pilC 1284390..1285601 (-) 1212 WP_083004809.1 type II secretion system F family protein Machinery gene
  M8331_RS06030 (M8331_06030) pilB 1285601..1286986 (-) 1386 WP_083004806.1 GspE/PulE family protein Machinery gene
  M8331_RS06035 (M8331_06035) pilA 1286986..1287420 (-) 435 WP_083004804.1 prepilin peptidase-dependent pilin Machinery gene
  M8331_RS06040 (M8331_06040) ampD 1287580..1288146 (+) 567 WP_083004802.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  M8331_RS06045 (M8331_06045) rppH 1288732..1289328 (+) 597 WP_083004799.1 RNA pyrophosphohydrolase -
  M8331_RS06050 (M8331_06050) - 1289331..1290125 (+) 795 WP_083004796.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 46018.91 Da        Isoelectric Point: 9.7864

>NTDB_id=691059 M8331_RS06025 WP_083004809.1 1284390..1285601(-) (pilC) [Pasteurella multocida strain 10159]
MNKLKMFRWKGINRLQQIQKGVIVAESKEIAQQSLLLQGVHQLHLQRNWQFSMQPKYTEICDLLMQLAMLLQASVPLKES
LQLLQRHASNIELTQWLRQLLCSLESGFSFSTALATQDRYLTKQEYQLISVGESTGKLPLVCAQLAKQRQQSLALRRKVQ
KMLFYPMLVLAVTLILTSLLLLFIVPQFAEIYANQPLPAFTVLLLNVSAGLRGYAFQLSLLLIFGFIFLMLNVRQRVGLY
RLKNCLIHFLPIFKKIAQHHELIHFCRHLHLMLSSGMPLQQALQTFLPTQKSGIAKHALTEMRLAEEVQLMLKGIAQGYT
FSEVIGSNLFPEMAQQMLHVGEQTGRLSEMLQYIAESYQQKLEHQLDLLSQLLEPCLMLVIGSIIGVILLGMYLPMFNMG
ALV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=691059 M8331_RS06025 WP_083004809.1 1284390..1285601(-) (pilC) [Pasteurella multocida strain 10159]
ATGAATAAATTAAAAATGTTTCGTTGGAAAGGAATAAATCGATTACAACAAATACAAAAAGGCGTTATTGTGGCGGAAAG
TAAAGAGATAGCACAGCAATCTTTATTACTTCAGGGCGTTCACCAACTGCATTTACAACGAAATTGGCAGTTTTCTATGC
AACCTAAATATACAGAGATTTGTGATCTGTTAATGCAATTAGCGATGTTATTACAAGCTTCGGTTCCCTTGAAGGAAAGT
TTACAGCTATTACAGCGACATGCTAGCAATATTGAGTTAACGCAATGGTTACGTCAGTTACTCTGTTCACTCGAAAGTGG
ATTTTCTTTTTCAACCGCGCTAGCCACACAAGATCGTTACTTAACAAAACAGGAATACCAATTAATTTCTGTTGGTGAAT
CGACAGGGAAACTACCACTTGTTTGTGCACAATTAGCGAAACAACGTCAACAATCACTGGCGTTACGACGCAAAGTTCAG
AAAATGTTGTTTTATCCAATGTTAGTGCTTGCTGTGACATTGATCTTAACGTCGTTGTTACTGCTGTTTATTGTGCCACA
GTTTGCTGAGATTTATGCAAATCAACCTTTACCTGCGTTTACTGTGTTGTTATTGAATGTATCGGCAGGGTTACGTGGTT
ATGCTTTTCAATTGAGTCTCCTATTAATTTTCGGCTTTATTTTTTTGATGTTAAATGTGAGACAGCGAGTTGGACTATAT
CGATTAAAAAATTGTCTGATTCATTTCCTTCCCATCTTTAAGAAAATTGCGCAACATCACGAGCTTATTCATTTTTGTCG
TCATTTACATCTTATGCTCAGCTCGGGCATGCCTTTACAACAGGCATTGCAGACTTTTTTACCTACACAGAAAAGTGGTA
TAGCAAAACACGCGCTTACCGAGATGCGACTTGCTGAAGAAGTCCAGTTAATGTTAAAGGGAATTGCTCAAGGTTATACG
TTTTCTGAAGTTATCGGCTCCAACTTATTTCCGGAGATGGCACAACAGATGTTACATGTTGGTGAACAGACAGGGCGATT
AAGCGAAATGTTGCAGTATATAGCAGAAAGTTATCAACAAAAGTTAGAGCACCAACTTGATTTACTTTCACAGTTGTTGG
AACCCTGTTTAATGTTAGTGATTGGTTCGATTATTGGCGTCATTTTATTGGGCATGTATTTACCTATGTTTAATATGGGG
GCATTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(265-395)

Type II secretion system (T2SS), protein F (T2SSF)

(64-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

48.395

100

0.486
  pilC Haemophilus influenzae 86-028NP

48.148

100

0.484
  pilC Glaesserella parasuis strain SC1401

38.765

100

0.39