Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   M8970_RS14980 Genome accession   NZ_CP097590
Coordinates   3046320..3046838 (-) Length   172 a.a.
NCBI ID   WP_007615071.1    Uniprot ID   -
Organism   Bacillus velezensis strain UA0195     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3041320..3051838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8970_RS14950 - 3042521..3042901 (-) 381 WP_032875338.1 VOC family protein -
  M8970_RS14955 - 3042958..3043896 (-) 939 WP_032875335.1 LacI family DNA-binding transcriptional regulator -
  M8970_RS14960 xth 3043959..3044717 (-) 759 WP_032875332.1 exodeoxyribonuclease III -
  M8970_RS14965 - 3044714..3045271 (-) 558 WP_032875329.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  M8970_RS14970 - 3045268..3045849 (-) 582 WP_032875326.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  M8970_RS14975 rpsR 3046037..3046276 (-) 240 WP_029325793.1 30S ribosomal protein S18 -
  M8970_RS14980 ssbA 3046320..3046838 (-) 519 WP_007615071.1 single-stranded DNA-binding protein SsbA Machinery gene
  M8970_RS14985 rpsF 3046878..3047165 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  M8970_RS14990 ychF 3047277..3048377 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  M8970_RS14995 - 3048504..3050507 (-) 2004 WP_032875323.1 molybdopterin-dependent oxidoreductase -
  M8970_RS15000 - 3050554..3050760 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18772.33 Da        Isoelectric Point: 4.7621

>NTDB_id=690735 M8970_RS14980 WP_007615071.1 3046320..3046838(-) (ssbA) [Bacillus velezensis strain UA0195]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNNGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=690735 M8970_RS14980 WP_007615071.1 3046320..3046838(-) (ssbA) [Bacillus velezensis strain UA0195]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAACGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

34.973

100

0.372