Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   OTB22_RS09430 Genome accession   NZ_CP113267
Coordinates   1849071..1849970 (-) Length   299 a.a.
NCBI ID   WP_000904848.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain BC2     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1844071..1854970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTB22_RS09410 (OTB22_09415) rsmA 1844826..1845698 (-) 873 WP_001216877.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  OTB22_RS09415 (OTB22_09420) - 1845829..1846137 (-) 309 WP_000333257.1 hypothetical protein -
  OTB22_RS09420 (OTB22_09425) - 1846130..1846771 (-) 642 WP_000565531.1 ABC transporter ATP-binding protein -
  OTB22_RS09425 (OTB22_09430) - 1846773..1848803 (-) 2031 WP_050076226.1 bacteriocin-associated integral membrane family protein -
  OTB22_RS09430 (OTB22_09435) comR 1849071..1849970 (-) 900 WP_000904848.1 helix-turn-helix transcriptional regulator Regulator
  OTB22_RS09435 (OTB22_09440) rnmV 1850042..1850602 (-) 561 WP_000660011.1 ribonuclease M5 -
  OTB22_RS09440 (OTB22_09445) - 1850602..1851375 (-) 774 WP_000575636.1 TatD family hydrolase -
  OTB22_RS09445 (OTB22_09450) - 1851680..1852651 (-) 972 Protein_1854 DUF1542 domain-containing protein -
  OTB22_RS09450 (OTB22_09455) rpmH 1852857..1852991 (-) 135 WP_000831905.1 50S ribosomal protein L34 -
  OTB22_RS09455 (OTB22_09460) - 1853159..1854112 (-) 954 WP_001155321.1 IS30-like element ISSpn8 family transposase -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35420.14 Da        Isoelectric Point: 4.6674

>NTDB_id=690682 OTB22_RS09430 WP_000904848.1 1849071..1849970(-) (comR) [Streptococcus pneumoniae strain BC2]
MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVYSLMPDFSALPPAYLELKYQI
LREPIYGKEEEYDKKEACLEEIYKTYFDNLPKEEQLACEVLQACLDTSRTRRPEYAELILEEHMPQIIEKEVYSTNDMLL
IRLFFYQMLIRKDLAKFINQIEELMLFLLEQKKVTKLENFFIIRDTLISGMCCLEKVGVTDCFNDYLSCLQEIMDKTQDY
QKKPLVFMFLWKQALREERDFSLAESFYQSSKTFAQLIGDEFLVKKLTEEWQEDVKKYL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=690682 OTB22_RS09430 WP_000904848.1 1849071..1849970(-) (comR) [Streptococcus pneumoniae strain BC2]
ATGTTAATTGGTCAAAAAATTAAAGAGATTCGGATAGAAAAAGGAATTAGTCGTCCAGATTTTTGTGGAGATGAGCAAGA
ACTGACAGTTCGTCAACTGTCGCGAATTGAAAGTGGAGCTTCGCAACCGAGTTTGCCCAAGTTAGACTATATTGCTCGCC
GGCTAGGAGTTCCAGTTTATAGCCTTATGCCGGATTTTTCAGCTCTTCCTCCTGCTTATTTAGAATTGAAATATCAGATT
TTACGTGAACCAATCTATGGTAAAGAAGAGGAGTACGATAAGAAGGAAGCGTGTTTGGAAGAGATTTATAAAACATACTT
TGATAATCTTCCTAAAGAAGAACAATTAGCATGTGAAGTATTGCAGGCGTGTTTGGATACTTCTAGAACTAGAAGGCCTG
AATATGCAGAGTTAATACTTGAGGAACATATGCCTCAGATCATAGAAAAAGAAGTTTATTCAACAAATGATATGTTGTTG
ATTCGTTTGTTTTTTTATCAAATGCTCATTAGAAAAGATCTTGCCAAATTTATAAATCAAATCGAAGAGCTAATGCTCTT
TCTTTTGGAACAGAAAAAGGTAACTAAATTAGAAAACTTCTTTATAATTAGAGATACTCTTATTTCAGGAATGTGTTGTC
TTGAAAAGGTAGGAGTAACTGATTGTTTTAATGATTATCTATCGTGTTTACAAGAAATTATGGATAAAACTCAAGATTAT
CAAAAGAAACCTCTTGTATTTATGTTTTTGTGGAAGCAAGCATTAAGAGAAGAAAGAGATTTTAGTTTAGCTGAATCATT
TTATCAGTCTTCTAAAACATTTGCGCAGCTAATTGGAGATGAATTTCTAGTAAAGAAATTGACAGAGGAATGGCAAGAGG
ATGTCAAAAAATATTTATAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(70-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus mutans UA159

37.755

98.328

0.371
  comR Streptococcus pyogenes MGAS8232

36.577

99.666

0.365
  comR Streptococcus pyogenes MGAS315

36

100

0.361
  comR Streptococcus suis P1/7

37.113

97.324

0.361
  comR Streptococcus suis 05ZYH33

37.113

97.324

0.361