Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   STO1_RS05465 Genome accession   NZ_AP018338
Coordinates   1077823..1079799 (-) Length   658 a.a.
NCBI ID   WP_033584148.1    Uniprot ID   A0A223ZUH8
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1072823..1084799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS05440 (STO1_010580) - 1072991..1073830 (-) 840 WP_096422334.1 amino acid ABC transporter substrate-binding protein -
  STO1_RS05445 (STO1_010590) - 1073846..1074475 (-) 630 WP_096422336.1 amino acid ABC transporter ATP-binding protein -
  STO1_RS05450 (STO1_010600) - 1074486..1075127 (-) 642 WP_000121156.1 amino acid ABC transporter permease -
  STO1_RS05455 (STO1_010610) - 1075264..1076493 (-) 1230 WP_172843642.1 tetratricopeptide repeat protein -
  STO1_RS05460 (STO1_010620) - 1076483..1077649 (-) 1167 WP_096422338.1 AI-2E family transporter -
  STO1_RS05465 (STO1_010630) amiA3 1077823..1079799 (-) 1977 WP_033584148.1 peptide ABC transporter substrate-binding protein Regulator
  STO1_RS05470 (STO1_010640) - 1079976..1080989 (+) 1014 WP_096422340.1 lactonase family protein -
  STO1_RS05475 (STO1_010650) - 1081033..1081452 (-) 420 WP_000940837.1 F0F1 ATP synthase subunit epsilon -
  STO1_RS05480 (STO1_010660) atpD 1081463..1082869 (-) 1407 WP_000094371.1 F0F1 ATP synthase subunit beta -
  STO1_RS05485 (STO1_010670) - 1082955..1083833 (-) 879 WP_000301227.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72514.67 Da        Isoelectric Point: 4.8101

>NTDB_id=69060 STO1_RS05465 WP_033584148.1 1077823..1079799(-) (amiA3) [Streptococcus oralis subsp. tigurinus strain osk_001]
MKKRIFLTAAVAVLSSALLAACSSGGKNANQPVTYTYVFSSDPATLDYTVSGNSSTKQVTGNVIDGLLENDQYGNLVPSV
AEDWSVSKDGLTYTYKIRKGIKWYTNEGEEYGEVKAQDFVTGLKHAVAKKSQALYLVQDSIKGLDDYINGKTNDFSTVGI
KATDDYTLVYTLNNPESFWNSKTTMGVLAPINEDFLASKGDDFGKPTDVTSILYNGPYLLKGLTSKSSIEMTKNQNYWDK
GNVFIDDIKLTFFDGQDADSLGRGFDEGHYPAAPLFKNSANYERFKEKYKDNIVYGQQRGGSYYISTNIDRVAYNHTSKT
TDEEKTSTKKALLNKDFRQALAFGADRKAAVSQVFGDEVAPRKLRTSFTPPTFVQIGDQSFGQVTKTELDKLDTAWSDVS
LDDAQDSLHNVEKAKTKLEAAKKTLQADGVQFPIHLDLPVSSTQTDFVRQAQSYKQSIEEALGAENVVVDIQQVSDDELG
SMTVLATSKDNIDWDINPNSGWSPDYADPSTYLDAFDPTSGPTLLGALGIAPGSDSSAIKAVGLDKYKELLDDANSEKTD
LEKRYSKYAKAQAWLTDSALIIPVNSDGAQMLVTKKVPGTGADGWVGDKTGENSYKYLKIQDKIVTSKEMEEFRKKFAEE
KAKSNEEYQKQLSSHIKD

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=69060 STO1_RS05465 WP_033584148.1 1077823..1079799(-) (amiA3) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGAAAAAACGTATTTTTCTAACGGCTGCAGTAGCAGTGTTGTCATCAGCACTACTAGCAGCTTGTTCGTCTGGTGGTAA
AAATGCCAACCAACCTGTGACTTATACTTATGTCTTCTCATCGGATCCTGCAACTTTGGACTATACAGTTTCTGGAAATT
CCAGTACCAAACAGGTGACTGGGAATGTCATCGATGGTTTGCTTGAGAATGACCAATATGGAAATCTTGTGCCCTCTGTA
GCAGAGGACTGGAGTGTTTCTAAAGATGGTTTGACTTACACCTATAAAATCCGGAAAGGGATTAAGTGGTACACTAATGA
AGGCGAAGAATATGGTGAAGTAAAGGCTCAGGATTTCGTGACAGGTTTGAAACATGCTGTCGCTAAGAAATCACAAGCCC
TCTATCTCGTACAGGATTCAATCAAAGGGTTGGATGATTATATTAACGGAAAAACAAATGATTTTTCTACTGTTGGAATT
AAGGCGACAGATGATTATACTCTTGTTTATACGCTTAATAATCCTGAATCTTTCTGGAATTCCAAGACAACGATGGGTGT
TTTAGCACCAATCAATGAAGACTTTTTAGCCTCTAAGGGGGATGATTTTGGTAAACCTACTGATGTTACAAGTATTCTAT
ACAATGGTCCTTACCTTCTGAAAGGTCTCACATCGAAATCTTCAATCGAGATGACAAAAAACCAAAACTATTGGGATAAA
GGAAATGTCTTCATTGATGATATAAAATTGACCTTCTTTGATGGTCAAGATGCAGACTCTCTTGGTCGTGGTTTTGATGA
AGGCCACTACCCAGCAGCTCCCCTCTTTAAGAATTCTGCAAACTATGAGCGATTCAAAGAAAAATACAAAGACAACATTG
TGTATGGTCAACAAAGAGGAGGTAGCTACTACATTTCAACTAATATTGACCGTGTAGCCTATAACCATACTTCTAAAACA
ACGGACGAAGAAAAGACATCTACTAAGAAAGCTTTGTTGAACAAAGATTTCCGCCAAGCCTTGGCTTTTGGAGCAGATCG
TAAGGCTGCTGTCTCTCAAGTATTTGGTGATGAAGTTGCCCCTCGTAAATTACGTACTAGCTTTACACCTCCAACATTTG
TTCAAATTGGGGATCAATCTTTTGGTCAAGTAACAAAAACAGAACTTGACAAGTTGGATACTGCTTGGAGCGATGTTAGC
TTAGATGATGCACAAGATTCACTTCATAATGTAGAGAAAGCTAAAACTAAACTTGAAGCGGCTAAGAAAACTCTTCAAGC
CGACGGTGTTCAGTTCCCTATTCATTTGGACTTGCCAGTATCCTCTACTCAAACAGATTTTGTACGTCAAGCTCAATCGT
ATAAACAATCAATAGAGGAAGCTCTTGGAGCTGAAAATGTAGTGGTTGATATCCAACAAGTTTCTGATGATGAATTGGGA
AGTATGACCGTTCTTGCAACTTCAAAAGACAATATCGACTGGGATATCAATCCAAACAGTGGATGGAGCCCAGACTATGC
AGATCCATCAACCTATCTTGATGCATTTGATCCAACATCTGGACCAACTCTTCTTGGAGCACTTGGTATTGCACCAGGAT
CAGATAGTTCAGCCATTAAGGCAGTAGGATTGGATAAATACAAAGAATTACTTGATGATGCTAACAGTGAGAAAACAGAT
CTCGAAAAACGCTATTCAAAATATGCTAAAGCTCAAGCATGGTTGACAGACAGTGCTTTGATCATCCCTGTTAACTCTGA
TGGTGCCCAAATGCTTGTTACAAAGAAAGTTCCAGGAACAGGAGCAGATGGTTGGGTCGGCGATAAAACAGGCGAAAACA
GTTATAAATATCTGAAGATTCAAGATAAGATTGTGACAAGTAAAGAAATGGAAGAATTCCGCAAGAAATTTGCTGAAGAA
AAAGCAAAATCAAACGAAGAATACCAAAAACAACTATCAAGTCATATTAAAGATTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223ZUH8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

55.455

100

0.556
  amiA3 Streptococcus thermophilus LMG 18311

55

100

0.552
  amiA Streptococcus salivarius strain HSISS4

54.78

100

0.549

Multiple sequence alignment