Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   M8286_RS07420 Genome accession   NZ_CP097577
Coordinates   1531743..1532387 (+) Length   214 a.a.
NCBI ID   WP_275600802.1    Uniprot ID   -
Organism   Streptococcus suis strain 3112     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1530518..1531507 1531743..1532387 flank 236


Gene organization within MGE regions


Location: 1530518..1532387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8286_RS07415 (M8286_07535) - 1530870..1531688 (+) 819 WP_275600801.1 cation diffusion facilitator family transporter -
  M8286_RS07420 (M8286_07540) cclA/cilC 1531743..1532387 (+) 645 WP_275600802.1 A24 family peptidase Machinery gene

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24265.26 Da        Isoelectric Point: 8.4759

>NTDB_id=690342 M8286_RS07420 WP_275600802.1 1531743..1532387(+) (cclA/cilC) [Streptococcus suis strain 3112]
MKTIILFFLGASIGSFLGLAIDRFPEQSIISPSSHCNACKRRLKAWDLIPILSQLSTKSKCRYCKAKIPYWYLRLEFLAG
LAVLLCHFQVLDLTETILILAGLVLTIYDIKHQEYPFAVWLVFTFTALVLSQLNWLFCGFLLLAYLTEKWQVNIGSGDFL
YLASLALICGFTELLWIIQISSLLGLLVFTIFKPKSIPYVPLLFISSIPIILCT

Nucleotide


Download         Length: 645 bp        

>NTDB_id=690342 M8286_RS07420 WP_275600802.1 1531743..1532387(+) (cclA/cilC) [Streptococcus suis strain 3112]
ATGAAGACAATTATCCTATTTTTCCTTGGAGCTTCTATCGGCTCCTTCTTGGGATTGGCCATCGACCGTTTCCCTGAACA
GTCCATTATCTCCCCCTCTAGTCACTGTAATGCCTGCAAGCGACGGCTCAAAGCCTGGGACCTAATTCCCATCCTATCCC
AGCTTTCGACAAAATCCAAATGCCGTTACTGCAAGGCGAAGATACCTTATTGGTATCTGAGATTGGAATTCTTAGCTGGT
CTAGCCGTCCTGCTCTGCCATTTTCAAGTCCTAGACCTAACCGAAACCATTCTCATCTTGGCAGGACTAGTTTTGACCAT
TTACGACATCAAACATCAGGAATATCCTTTTGCTGTCTGGCTCGTTTTTACTTTTACAGCTCTGGTACTCTCCCAGCTCA
ACTGGCTCTTCTGTGGCTTTTTACTCTTGGCCTATCTGACTGAAAAATGGCAAGTCAATATTGGTTCTGGTGACTTTCTC
TATCTGGCAAGTTTGGCCTTAATATGTGGATTTACAGAACTCCTCTGGATTATCCAGATTAGTTCCCTCCTAGGGCTTCT
TGTCTTCACTATTTTCAAACCCAAGTCTATTCCCTATGTACCACTCCTTTTCATTTCAAGTATTCCTATCATTCTGTGCA
CCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

48.585

99.065

0.481
  cclA/cilC Streptococcus pneumoniae Rx1

48.058

96.262

0.463
  cclA/cilC Streptococcus pneumoniae D39

48.058

96.262

0.463
  cclA/cilC Streptococcus pneumoniae R6

48.058

96.262

0.463
  cclA/cilC Streptococcus pneumoniae TIGR4

46.226

99.065

0.458
  cclA/cilC Streptococcus mitis NCTC 12261

44.34

99.065

0.439