Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   M8120_RS06420 Genome accession   NZ_CP097576
Coordinates   1281116..1281481 (+) Length   121 a.a.
NCBI ID   WP_190359862.1    Uniprot ID   -
Organism   Microcystis aeruginosa str. Chao 1910     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1276116..1286481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8120_RS06395 (M8120_06345) - 1276498..1277447 (+) 950 WP_265795351.1 IS630-like element ISMae26 family transposase -
  M8120_RS06400 (M8120_06350) - 1277413..1278234 (+) 822 WP_265795837.1 IS4 family transposase -
  M8120_RS06405 (M8120_06355) - 1278255..1279040 (+) 786 Protein_1271 IS630 family transposase -
  M8120_RS06410 (M8120_06360) - 1279180..1280517 (+) 1338 Protein_1272 RNA-guided endonuclease InsQ/TnpB family protein -
  M8120_RS06415 (M8120_06365) - 1280680..1280886 (+) 207 WP_190359863.1 hypothetical protein -
  M8120_RS06420 (M8120_06370) pilH 1281116..1281481 (+) 366 WP_190359862.1 response regulator transcription factor Machinery gene
  M8120_RS06425 (M8120_06375) - 1281574..1282107 (+) 534 WP_190359861.1 CheW domain-containing protein -
  M8120_RS06430 (M8120_06380) - 1282210..1284615 (+) 2406 WP_190359860.1 methyl-accepting chemotaxis protein -
  M8120_RS06435 (M8120_06385) - 1284676..1285869 (+) 1194 WP_190359859.1 glycosyltransferase -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13849.18 Da        Isoelectric Point: 6.9287

>NTDB_id=690289 M8120_RS06420 WP_190359862.1 1281116..1281481(+) (pilH) [Microcystis aeruginosa str. Chao 1910]
MSEILLVEDSQTQREWLCELLRKSGIKVTSAKDGVEALEHIQRVNPDLVVLDIVMPQMNGYEVCRRLKSDPKTQNVPVVI
CSSKGEVFDRYWGMKIGADAYIVKPFEPIEFIGTIKQLLRR

Nucleotide


Download         Length: 366 bp        

>NTDB_id=690289 M8120_RS06420 WP_190359862.1 1281116..1281481(+) (pilH) [Microcystis aeruginosa str. Chao 1910]
ATGAGTGAAATATTGCTGGTAGAAGACAGCCAAACGCAACGGGAATGGCTCTGTGAGCTACTCCGCAAGAGCGGCATTAA
GGTCACGAGCGCCAAAGATGGGGTAGAAGCCCTCGAACATATTCAGAGGGTTAATCCCGATTTAGTCGTCCTCGATATCG
TCATGCCCCAGATGAATGGTTATGAGGTGTGTCGTCGTCTCAAGTCGGATCCAAAAACCCAAAATGTCCCGGTGGTCATC
TGTTCCTCGAAAGGGGAAGTTTTTGATCGCTATTGGGGCATGAAAATCGGAGCCGATGCCTACATTGTCAAGCCCTTTGA
GCCAATCGAGTTCATTGGTACTATTAAACAACTGCTGCGCCGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

70

99.174

0.694
  vicR Streptococcus mutans UA159

37.19

100

0.372
  pilG Acinetobacter baumannii strain A118

39.13

95.041

0.372
  micA Streptococcus pneumoniae Cp1015

36.364

100

0.364