Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   M8789_RS04275 Genome accession   NZ_CP097571
Coordinates   914653..915639 (+) Length   328 a.a.
NCBI ID   WP_000959275.1    Uniprot ID   -
Organism   Staphylococcus aureus strain V40     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 909653..920639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8789_RS04250 (M8789_04250) opp4B 909866..910828 (+) 963 WP_000593417.1 oligopeptide ABC transporter permease -
  M8789_RS04255 (M8789_04255) opp4C 910840..911721 (+) 882 WP_001180266.1 oligopeptide ABC transporter permease -
  M8789_RS04260 (M8789_04260) trpS 911763..912752 (-) 990 WP_000448935.1 tryptophan--tRNA ligase -
  M8789_RS04265 (M8789_04265) spxA 913047..913442 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  M8789_RS04270 (M8789_04270) mecA 913813..914532 (+) 720 WP_001217727.1 adaptor protein MecA -
  M8789_RS04275 (M8789_04275) coiA 914653..915639 (+) 987 WP_000959275.1 competence protein CoiA Machinery gene
  M8789_RS04280 (M8789_04280) pepF 915687..917495 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  M8789_RS04285 (M8789_04285) yjbH 917955..918761 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  M8789_RS04290 (M8789_04290) - 918784..919149 (-) 366 WP_000214066.1 truncated hemoglobin YjbI -
  M8789_RS04295 (M8789_04295) - 919253..919846 (-) 594 WP_000224622.1 CYTH domain-containing protein -
  M8789_RS04300 (M8789_04300) - 920032..920379 (+) 348 WP_001242107.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38787.39 Da        Isoelectric Point: 9.6529

>NTDB_id=690179 M8789_RS04275 WP_000959275.1 914653..915639(+) (coiA) [Staphylococcus aureus strain V40]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEAFLKEIKQIPDILINNKYVIELQYLPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLH
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=690179 M8789_RS04275 WP_000959275.1 914653..915639(+) (coiA) [Staphylococcus aureus strain V40]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGGCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTTGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAATTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTGCAT
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

96.646

100

0.966
  coiA Staphylococcus aureus MW2

96.646

100

0.966