Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M8008_RS08280 Genome accession   NZ_CP097540
Coordinates   1669410..1669916 (+) Length   168 a.a.
NCBI ID   WP_012178278.1    Uniprot ID   A8LKY4
Organism   Dinoroseobacter shibae strain DSM 112351     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1664410..1674916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8008_RS08245 (M8008_08245) - 1664723..1665604 (-) 882 WP_012178271.1 ABC transporter permease -
  M8008_RS08250 (M8008_08250) - 1665720..1666031 (-) 312 WP_012178272.1 antibiotic biosynthesis monooxygenase -
  M8008_RS08255 (M8008_08255) rpsI 1666178..1666672 (-) 495 WP_012178273.1 30S ribosomal protein S9 -
  M8008_RS08260 (M8008_08260) rplM 1666677..1667135 (-) 459 WP_012178274.1 50S ribosomal protein L13 -
  M8008_RS08265 (M8008_08265) - 1667361..1667783 (-) 423 WP_012178275.1 PaaI family thioesterase -
  M8008_RS08270 (M8008_08270) - 1667840..1668634 (+) 795 WP_012178276.1 enoyl-CoA hydratase -
  M8008_RS08275 (M8008_08275) - 1668641..1669249 (-) 609 WP_012178277.1 lytic transglycosylase domain-containing protein -
  M8008_RS08280 (M8008_08280) ssb 1669410..1669916 (+) 507 WP_012178278.1 single-stranded DNA-binding protein Machinery gene
  M8008_RS08285 (M8008_08285) - 1669966..1671222 (-) 1257 WP_012178279.1 hypothetical protein -
  M8008_RS08290 (M8008_08290) aroB 1671408..1672559 (-) 1152 WP_012178280.1 3-dehydroquinate synthase -
  M8008_RS08295 (M8008_08295) - 1672630..1673187 (-) 558 WP_012178281.1 shikimate kinase -
  M8008_RS08300 (M8008_08300) - 1673309..1673446 (+) 138 WP_085930398.1 hypothetical protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18217.93 Da        Isoelectric Point: 5.3360

>NTDB_id=689967 M8008_RS08280 WP_012178278.1 1669410..1669916(+) (ssb) [Dinoroseobacter shibae strain DSM 112351]
MAGSVNKVILVGNLGRDPEVRTFQNGGKVCNLRIATSENWKDRNTGERREKTEWHSVAIFSEPLARVAEQYLRKGSKVYI
EGQLETRKWQDQSGQDRYSTEVVLRPYKSELTMLDGRDGGGGGMGGGGGYVSDQSGGGGYSDDRFGGDSGNAPAGGGRHN
DLDDEIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=689967 M8008_RS08280 WP_012178278.1 1669410..1669916(+) (ssb) [Dinoroseobacter shibae strain DSM 112351]
ATGGCAGGTTCGGTCAACAAGGTCATTTTGGTCGGAAATCTCGGGCGCGACCCGGAAGTGCGCACGTTCCAGAATGGCGG
CAAGGTGTGCAATCTGCGCATTGCCACCTCCGAGAACTGGAAGGATCGCAACACCGGCGAGCGGCGCGAGAAGACAGAGT
GGCACTCCGTCGCGATCTTCTCGGAACCGCTCGCGCGGGTGGCAGAACAGTATCTGCGCAAAGGCTCCAAGGTTTATATC
GAGGGCCAGTTGGAAACCCGGAAATGGCAGGACCAGTCTGGCCAGGACCGTTACTCCACCGAGGTCGTTCTGCGCCCCTA
CAAGTCCGAACTGACCATGCTGGACGGTCGCGACGGCGGCGGCGGTGGCATGGGCGGTGGTGGCGGCTACGTCTCGGACC
AGTCCGGCGGCGGCGGATACAGCGATGACCGGTTCGGCGGCGACAGCGGCAACGCGCCTGCGGGAGGCGGGCGCCATAAC
GATCTCGACGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8LKY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.462

100

0.548
  ssb Vibrio cholerae strain A1552

52.601

100

0.542
  ssb Neisseria meningitidis MC58

41.341

100

0.44
  ssb Neisseria gonorrhoeae MS11

41.341

100

0.44