Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M5524_RS00645 Genome accession   NZ_CP097466
Coordinates   175784..176287 (-) Length   167 a.a.
NCBI ID   WP_373989580.1    Uniprot ID   -
Organism   Duganella sp. BuS-21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 170784..181287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5524_RS00615 (M5524_00605) - 171158..171409 (+) 252 WP_373989574.1 type II toxin-antitoxin system CcdA family antitoxin -
  M5524_RS00620 (M5524_00610) - 171409..171726 (+) 318 WP_373989575.1 CcdB family protein -
  M5524_RS00625 (M5524_00615) - 171761..171922 (-) 162 WP_373989576.1 hypothetical protein -
  M5524_RS00630 (M5524_00620) - 173239..173658 (+) 420 WP_373989577.1 hypothetical protein -
  M5524_RS00635 (M5524_00625) - 173708..174445 (-) 738 WP_373989578.1 hypothetical protein -
  M5524_RS00640 (M5524_00630) - 174618..175082 (+) 465 WP_373989579.1 hypothetical protein -
  M5524_RS00645 (M5524_00635) ssb 175784..176287 (-) 504 WP_373989580.1 single-stranded DNA-binding protein Machinery gene
  M5524_RS00650 (M5524_00640) uvrA 176534..179380 (+) 2847 WP_373989581.1 excinuclease ABC subunit UvrA -
  M5524_RS00655 (M5524_00645) - 179398..180285 (+) 888 WP_373989582.1 hypothetical protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18231.55 Da        Isoelectric Point: 5.9518

>NTDB_id=689570 M5524_RS00645 WP_373989580.1 175784..176287(-) (ssb) [Duganella sp. BuS-21]
MASVNKVIIVGNLGRDPEIRYMPSGDAIANIAVATSYKSKDRNTGEQKELTEWHRISFFGRLAEIVGQYLKKGSSVYVEG
RLQTRKYTDKDGVEKYATDIIAEQMQMLGGRQGMGEGGGMDDSGGYEAPPQRQAPAPRPQMAAPAPAPRPAPRPAPNFSD
MDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=689570 M5524_RS00645 WP_373989580.1 175784..176287(-) (ssb) [Duganella sp. BuS-21]
ATGGCATCAGTCAACAAAGTCATCATCGTCGGCAATCTGGGTCGCGATCCGGAAATTCGCTACATGCCTAGCGGTGACGC
GATCGCCAACATTGCAGTGGCGACATCGTACAAATCGAAGGACCGCAACACCGGCGAGCAGAAAGAGCTGACCGAGTGGC
ACCGCATCTCGTTCTTCGGCCGCCTGGCGGAAATCGTCGGCCAATACCTGAAAAAAGGTTCGTCGGTCTACGTCGAAGGC
CGCCTGCAGACCCGTAAATACACGGACAAGGACGGCGTAGAGAAGTACGCAACCGACATCATCGCCGAGCAAATGCAAAT
GCTGGGTGGCCGTCAAGGCATGGGTGAAGGCGGCGGCATGGACGACAGCGGCGGCTACGAAGCCCCGCCACAGCGCCAGG
CACCGGCCCCACGTCCACAAATGGCTGCCCCGGCGCCGGCGCCACGCCCGGCCCCACGTCCAGCACCGAACTTCTCGGAC
ATGGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.111

100

0.551
  ssb Neisseria gonorrhoeae MS11

52.571

100

0.551
  ssb Glaesserella parasuis strain SC1401

48.649

100

0.539
  ssb Neisseria meningitidis MC58

51.136

100

0.539