Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   UtA1_RS12305 Genome accession   NZ_AP018335
Coordinates   2568967..2571291 (-) Length   774 a.a.
NCBI ID   WP_096551333.1    Uniprot ID   -
Organism   Ureibacillus thermosphaericus strain A1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2563967..2576291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UtA1_RS12285 - 2564127..2565521 (+) 1395 WP_232019838.1 SH3 domain-containing protein -
  UtA1_RS12290 dtd 2565570..2566010 (-) 441 WP_096551329.1 D-aminoacyl-tRNA deacylase -
  UtA1_RS12295 - 2566033..2568228 (-) 2196 WP_096551331.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  UtA1_RS12300 - 2568441..2568953 (-) 513 WP_016838387.1 adenine phosphoribosyltransferase -
  UtA1_RS12305 recJ 2568967..2571291 (-) 2325 WP_096551333.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  UtA1_RS12310 secDF 2571431..2573698 (-) 2268 WP_016838389.1 protein translocase subunit SecDF -
  UtA1_RS12315 - 2573937..2574395 (-) 459 WP_232019839.1 post-transcriptional regulator -
  UtA1_RS12320 - 2574361..2575878 (+) 1518 WP_016838391.1 oligosaccharide flippase family protein -

Sequence

Protein


Download         Length: 774 a.a.        Molecular weight: 87880.60 Da        Isoelectric Point: 5.4403

>NTDB_id=68951 UtA1_RS12305 WP_096551333.1 2568967..2571291(-) (recJ) [Ureibacillus thermosphaericus strain A1]
MIQSSKKWKIQIPDEMFVQQLQNNLHISSLTAKILASRVKTLDEARNIIHMKDDQLHNPYLLTGMKEAVERIELALHRGE
KILIYGDYDADGITSTSVILHTLLDLGADVDFEIPNRFTHGYGPNEELFRLAHEKGIQLIITVDNGISGIEPIRIAKELG
MDVIVTDHHEPGEELPPADVIIHPRVPEGKYPFGELAGVGVAFKLAHALYGEVPEHLFEYVALGTIADLVPLTGENRYIV
RKGLEKLRKSNHPWVQALCEASGVKQHEIDEEIIGFYFGPRLNAIGRLGDAKPGVEFLMSEDLASATMGAKLLNEKNNER
KEYVNSITEEAIEMIENNPDISNSSVLVVAKEGWNPGVIGIVASRLVEKYYKPTIVLSIDSELGLAKGSGRSIEGFHLYN
ELAKNRDILPHFGGHPMAAGMTLSAEHIDELRVRLHQQASTCLSDEMLTPTLYIDVPIDLSEVTVEAIEELQKLKPFGVG
FEKPIFAIQQVSIRSMRKIGANENHIKMELEDAYGILDAVGFNKGYLFNEISYGVKLSIVGDLQINEWQGRKKPQFLLSD
VQILEWQLFDYRGKVNANHWVGSIPIEESSFIAFREETIQYFQAVIPSIQLVEDEIDNSLSSYIVLLDLPKRIHTMEKLI
EIAKPQRIYAVFYTPNSQYFNGMPTRKHFAQYYTFLKNRPFFNLNEHIHQLSKHFGLNVDTIKFMTKVFFELGFVTIENG
LLSVNEFASKRSLTEATTYQLRQQQIELEQKFLYSTYSELKQWFDNRMKELSYS

Nucleotide


Download         Length: 2325 bp        

>NTDB_id=68951 UtA1_RS12305 WP_096551333.1 2568967..2571291(-) (recJ) [Ureibacillus thermosphaericus strain A1]
ATGATACAATCATCAAAAAAATGGAAGATCCAAATTCCCGATGAAATGTTTGTTCAACAATTACAAAACAATTTACATAT
TTCTAGTTTGACTGCAAAAATATTAGCATCAAGAGTGAAGACACTAGATGAAGCTAGAAATATTATACATATGAAAGATG
ACCAACTACATAATCCTTATTTGTTAACGGGGATGAAAGAAGCGGTAGAACGAATTGAATTAGCATTACATCGAGGGGAA
AAGATATTAATCTATGGAGATTATGATGCAGATGGTATTACGAGTACGTCCGTCATATTGCATACATTGCTTGATTTAGG
AGCAGATGTAGATTTTGAGATTCCGAATCGCTTCACACATGGATATGGGCCAAACGAAGAATTGTTCAGATTGGCACATG
AGAAAGGAATCCAACTGATTATTACTGTCGATAATGGAATTAGCGGCATCGAACCGATACGCATAGCAAAAGAGCTTGGT
ATGGATGTGATTGTTACAGATCACCATGAACCGGGAGAAGAGCTGCCGCCTGCAGACGTCATTATTCATCCGAGGGTACC
AGAAGGGAAATATCCTTTTGGTGAATTGGCAGGGGTAGGCGTAGCTTTTAAGCTTGCCCACGCATTATATGGAGAGGTGC
CTGAGCATTTGTTTGAATACGTTGCACTTGGCACAATCGCAGATCTTGTCCCCTTAACTGGAGAGAATCGATACATTGTT
CGTAAAGGGTTAGAGAAATTGCGAAAGTCAAATCACCCATGGGTTCAAGCTTTATGTGAAGCATCAGGAGTAAAGCAGCA
TGAAATCGATGAAGAAATTATCGGTTTTTATTTTGGTCCTCGATTAAATGCTATAGGACGCCTAGGTGATGCAAAACCCG
GTGTAGAGTTTTTAATGAGTGAAGATTTAGCAAGTGCCACAATGGGAGCTAAATTGCTAAATGAAAAAAATAATGAGAGA
AAAGAGTATGTCAATTCGATTACTGAAGAAGCAATAGAAATGATTGAAAATAATCCGGATATTAGCAATTCTTCAGTGCT
TGTCGTGGCAAAAGAAGGATGGAATCCGGGGGTAATTGGAATTGTTGCTTCCCGTTTAGTAGAGAAATATTATAAACCGA
CAATCGTGTTATCGATCGATTCAGAATTGGGATTAGCAAAAGGTTCAGGACGCAGCATCGAAGGATTTCATTTATACAAT
GAACTAGCAAAAAATCGGGATATTCTTCCGCATTTTGGCGGACATCCAATGGCTGCAGGTATGACGCTTTCAGCTGAACA
TATCGATGAATTGAGAGTACGACTTCATCAACAAGCATCAACATGTTTATCCGATGAAATGTTAACGCCGACATTATACA
TTGATGTTCCTATCGATTTAAGTGAAGTAACGGTTGAAGCAATTGAAGAATTACAGAAGTTGAAACCATTTGGTGTTGGA
TTTGAAAAGCCGATTTTTGCTATACAACAAGTTTCGATTCGTTCAATGCGCAAAATCGGTGCAAATGAGAACCATATAAA
AATGGAATTGGAAGATGCATATGGAATTCTTGATGCAGTTGGTTTTAACAAAGGTTATTTATTCAATGAAATTTCCTATG
GCGTGAAATTATCCATTGTTGGTGATTTGCAAATCAATGAATGGCAAGGTAGAAAAAAACCGCAATTTTTACTTTCGGAT
GTTCAGATACTTGAGTGGCAGTTATTTGATTATCGGGGAAAAGTAAATGCCAATCATTGGGTGGGAAGCATTCCTATTGA
AGAATCATCCTTTATTGCTTTTCGTGAGGAAACAATTCAATATTTTCAAGCAGTCATACCATCCATTCAATTAGTTGAAG
ATGAAATTGACAATTCTCTTTCATCGTATATTGTATTATTGGATTTACCAAAACGTATTCATACAATGGAAAAGCTAATT
GAAATTGCAAAACCGCAACGTATTTATGCGGTATTTTACACACCGAATTCCCAATATTTTAATGGCATGCCAACACGAAA
GCATTTTGCTCAATACTATACATTTCTAAAAAATCGCCCATTCTTTAACTTAAACGAACATATTCATCAACTATCCAAAC
ATTTTGGTTTAAATGTGGATACAATAAAGTTTATGACAAAGGTGTTTTTTGAGCTCGGTTTTGTTACAATAGAAAATGGT
TTGCTTTCCGTCAATGAATTTGCAAGTAAACGTTCTTTAACTGAAGCTACCACATATCAATTGCGACAACAGCAAATCGA
ATTGGAACAAAAATTTTTATACTCAACTTATTCAGAGTTAAAACAATGGTTTGATAATCGAATGAAGGAATTATCTTATT
CCTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(313-437)

RecJ OB domain (RecJ_OB)

(454-560)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(567-764)

DHH family (DHH)

(81-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

48.849

100

0.494

Multiple sequence alignment