Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV/pilI   Type   Regulator
Locus tag   HT085_RS02695 Genome accession   NZ_AP023069
Coordinates   517853..518461 (+) Length   202 a.a.
NCBI ID   WP_003690898.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TUM19854     
Function   repress natural transformation; antagonize ComP (predicted from homology)   
Competence regulation

Genomic Context

Location: 512853..523461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT085_RS02670 (TUM19854C_04980) - 513294..513626 (+) 333 WP_003687908.1 hypothetical protein -
  HT085_RS02675 (TUM19854C_04990) - 513956..514465 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  HT085_RS02680 (TUM19854C_05000) - 514697..515278 (-) 582 WP_003690895.1 superoxide dismutase -
  HT085_RS02685 (TUM19854C_05010) dnaB 515442..516848 (+) 1407 WP_003690896.1 replicative DNA helicase -
  HT085_RS02690 (TUM19854C_05020) pilH 517156..517821 (+) 666 WP_003690897.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HT085_RS02695 (TUM19854C_05030) pilV/pilI 517853..518461 (+) 609 WP_003690898.1 type IV pilus modification protein PilV Regulator
  HT085_RS02700 (TUM19854C_05040) pilJ 518458..519399 (+) 942 WP_003690899.1 PilW family protein Machinery gene
  HT085_RS02705 (TUM19854C_05050) pilK 519378..519986 (+) 609 WP_003690900.1 pilus assembly protein Machinery gene
  HT085_RS02710 (TUM19854C_05060) pilL 519988..520461 (+) 474 WP_025455782.1 PilX family type IV pilin Machinery gene
  HT085_RS02715 (TUM19854C_05070) - 521073..521518 (-) 446 Protein_523 AzlC family ABC transporter permease -
  HT085_RS02720 (TUM19854C_05080) dut 521684..522136 (+) 453 WP_003690909.1 dUTP diphosphatase -
  HT085_RS02725 (TUM19854C_05090) dapC 522214..523401 (+) 1188 WP_003690911.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22029.98 Da        Isoelectric Point: 4.9985

>NTDB_id=68951 HT085_RS02695 WP_003690898.1 517853..518461(+) (pilV/pilI) [Neisseria gonorrhoeae strain TUM19854]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYTGSYTPTYSGGDFKLNNLISKKDLAKTQLDRFGYELKQALPDAVDIRYAVCKDSSGKAPTLSGGTFSSNCDDKANG
DTLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 609 bp        

>NTDB_id=68951 HT085_RS02695 WP_003690898.1 517853..518461(+) (pilV/pilI) [Neisseria gonorrhoeae strain TUM19854]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGCTGATAGAAGTCTTGGTTGCTATGCTGGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTGCAGCTGCGGACGGTCGCTTCCGTCAGGGAAGCGGAAACGCAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACACGGGGTCGTACACCCCCACTTACTCTGGCGGCGATTTCAAGCTTAATAATTTGATAAGCAAGAAGGA
TTTGGCAAAGACCCAGTTGGACAGGTTCGGTTATGAATTGAAACAAGCCTTGCCGGATGCGGTAGATATTCGTTACGCTG
TCTGCAAGGATTCGTCGGGTAAGGCACCGACATTGTCCGGCGGTACTTTTTCTTCAAATTGCGACGATAAGGCAAACGGG
GATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGAGGTGAGCGG
CGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV/pilI Neisseria gonorrhoeae MS11

94.059

100

0.941
  pilV Neisseria meningitidis 8013

83.981

100

0.856

Multiple sequence alignment