Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   UtA1_RS12225 Genome accession   NZ_AP018335
Coordinates   2549443..2551929 (-) Length   828 a.a.
NCBI ID   WP_096551311.1    Uniprot ID   -
Organism   Ureibacillus thermosphaericus strain A1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2544443..2556929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UtA1_RS12210 - 2545411..2546031 (+) 621 WP_232019951.1 methyl-accepting chemotaxis protein -
  UtA1_RS12215 - 2546091..2546945 (-) 855 WP_016839412.1 AraC family transcriptional regulator -
  UtA1_RS12220 asnB 2547140..2548987 (-) 1848 Protein_2461 asparagine synthase (glutamine-hydrolyzing) -
  UtA1_RS12225 recD2 2549443..2551929 (-) 2487 WP_096551311.1 ATP-dependent RecD-like DNA helicase Machinery gene
  UtA1_RS12230 hisA 2552069..2552818 (+) 750 WP_096551313.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase -
  UtA1_RS12235 - 2553030..2553698 (-) 669 WP_096551315.1 lipopolysaccharide assembly protein LapB -
  UtA1_RS12240 mnmA 2553743..2554864 (-) 1122 WP_096551317.1 tRNA 2-thiouridine(34) synthase MnmA -
  UtA1_RS12245 - 2554885..2556030 (-) 1146 WP_096551319.1 cysteine desulfurase family protein -
  UtA1_RS12250 cymR 2556066..2556485 (-) 420 WP_016839403.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 828 a.a.        Molecular weight: 92996.46 Da        Isoelectric Point: 4.9258

>NTDB_id=68950 UtA1_RS12225 WP_096551311.1 2549443..2551929(-) (recD2) [Ureibacillus thermosphaericus strain A1]
MKVEENFTILKTTKTFVLGRPIVSIFHNASNMYSIVKVKIKETNLQYTEKEITVVGYFPTLDEEHDYRFFGSLKHHPKYG
IQFQVEMFEREVPATEQGVIHYLSSDLFPGIGPKTAELIVKTLGTDALKKMMENPQILDEVPRLSEEKKMTIRSTLEQNL
GLDKIMIQLNEWGFGPQLGMKIYQTYREETIHLLTENPYRLIEEVEGVGFTKADELGSKIGITGNHPDRIKAAVLHVLNQ
AALSEGHVYLEAEHVLPEVKGMLEQSQPVEIPFESISKAVIELEEEGKICGEETRIYLPSLYFSEVGIATKILQLLKQNE
QSQIFSKDEIRKAIGEVEERLEVTYAETQARAIEQALNSSVMILTGGPGTGKTTVIRGLVEVYAELHGISLDPKEYAKRE
EPFPIILAAPTGRAAKRLSESTGLPAMTIHRLLGFNGQEKEEESDREIEGRLVIIDEMSMVDTWLSHQLLKSIPLNAQVV
LVGDQDQLPPVGPGQVLKDLLASKVVPTIELTEVYRQADGSTIIELAHQIKKGQIPTNFTEKTTDRSFIKASKDQIASVV
TQVVKSALAKGQSIRDIQVLAPMYKGPAGIDYLNKEIQELVNSNEDGTRKEVKYGDTIFRIGDKVLQLVNQPESNVFNGD
IGEIVAIIKAKETVEKQDIVVVSYDGNEVTYERSDLNQITLAYCCSIHKAQGSEFQTVIMPIVRSYSKMLRRNLIYTGIT
RAKNYLILCGEPEEFMKGIQRTDDLKRFTTLRARLNPAKMNDDRNQEMKMEGEKLDEQIVHLSPDDCNEQQTTGDTTSLP
PVLNAETAPKIHPMIGMDGITPYDFLDE

Nucleotide


Download         Length: 2487 bp        

>NTDB_id=68950 UtA1_RS12225 WP_096551311.1 2549443..2551929(-) (recD2) [Ureibacillus thermosphaericus strain A1]
ATGAAAGTGGAGGAAAACTTCACCATACTCAAAACGACAAAAACCTTTGTTTTAGGCCGGCCAATTGTTTCCATTTTTCA
TAACGCATCCAACATGTATTCTATTGTAAAAGTAAAAATTAAGGAAACCAATTTGCAATATACAGAAAAAGAAATCACAG
TTGTAGGATATTTTCCAACCCTTGATGAAGAACATGACTATCGTTTTTTTGGAAGTTTGAAGCATCATCCGAAATACGGA
ATTCAATTCCAAGTAGAAATGTTTGAAAGGGAAGTTCCTGCAACTGAACAAGGTGTCATTCACTATTTATCGAGTGACTT
ATTTCCGGGTATTGGTCCAAAAACTGCTGAGTTGATTGTCAAAACGCTAGGGACTGATGCGCTGAAAAAAATGATGGAAA
ATCCACAAATTCTCGATGAAGTTCCAAGGCTTTCTGAAGAGAAAAAAATGACTATTCGCAGCACTTTAGAACAAAATTTA
GGTTTGGATAAAATTATGATTCAATTGAACGAATGGGGATTCGGACCGCAATTAGGAATGAAAATATATCAAACGTATCG
AGAAGAAACAATTCATTTGTTAACCGAAAATCCTTATCGTTTAATTGAAGAAGTAGAAGGGGTTGGATTTACAAAAGCCG
ATGAATTGGGCAGCAAAATCGGCATAACAGGAAACCATCCCGACCGAATTAAAGCAGCAGTCTTACATGTGTTGAATCAA
GCTGCTTTATCTGAAGGGCATGTATATTTAGAAGCGGAACATGTATTGCCTGAGGTTAAAGGTATGCTGGAACAGAGCCA
ACCTGTAGAAATTCCTTTTGAGTCTATTTCAAAAGCGGTTATTGAATTGGAAGAGGAAGGGAAAATTTGCGGCGAAGAGA
CGAGAATTTACTTGCCATCCTTATATTTTAGTGAAGTTGGCATCGCCACTAAAATTTTGCAACTTTTAAAGCAAAATGAA
CAAAGTCAAATTTTTTCAAAAGACGAGATACGAAAAGCAATCGGAGAAGTCGAAGAACGTTTGGAAGTGACTTATGCAGA
AACGCAAGCAAGAGCCATTGAACAAGCTCTAAACTCGTCCGTTATGATCTTAACAGGTGGGCCAGGAACTGGGAAAACGA
CCGTTATTCGAGGATTAGTTGAAGTGTATGCAGAACTTCACGGAATTTCCTTAGATCCTAAAGAATATGCGAAGAGGGAA
GAACCGTTTCCAATTATTCTCGCAGCACCAACTGGTAGAGCTGCAAAAAGACTTTCGGAATCTACGGGTTTACCAGCGAT
GACAATTCACCGATTATTAGGTTTTAATGGTCAAGAAAAAGAGGAAGAATCAGATCGTGAAATCGAAGGCCGTCTTGTAA
TAATCGATGAAATGTCCATGGTAGATACGTGGTTAAGTCACCAATTGTTAAAAAGTATTCCTCTCAATGCTCAAGTGGTT
CTTGTAGGAGATCAAGATCAATTGCCTCCGGTTGGACCTGGACAAGTATTAAAGGACTTATTAGCTTCTAAAGTCGTGCC
AACCATAGAACTAACAGAAGTATATCGCCAAGCAGATGGTTCTACGATTATCGAACTGGCCCATCAAATTAAAAAAGGGC
AAATTCCAACTAACTTTACTGAAAAAACGACCGATCGTTCTTTTATTAAAGCTTCAAAAGATCAAATTGCCAGCGTCGTC
ACACAAGTTGTAAAAAGTGCATTGGCAAAAGGTCAATCTATACGTGATATACAAGTGTTGGCACCTATGTACAAGGGGCC
AGCTGGTATTGATTATTTAAATAAAGAAATTCAAGAGCTTGTGAATTCAAACGAGGATGGAACGAGAAAAGAAGTAAAGT
ATGGCGATACGATTTTCCGCATTGGTGATAAAGTTTTACAGCTGGTCAACCAGCCGGAAAGTAATGTTTTTAACGGTGAT
ATTGGAGAAATTGTAGCAATCATAAAAGCGAAAGAAACGGTTGAAAAACAAGATATCGTTGTCGTTTCTTATGATGGCAA
TGAAGTGACGTATGAACGATCAGATTTAAATCAAATTACTCTGGCTTATTGTTGCTCCATTCATAAAGCGCAAGGCAGTG
AATTCCAAACTGTGATTATGCCCATTGTTCGAAGCTATTCGAAAATGCTTCGTAGAAATTTGATTTATACAGGAATTACT
CGTGCGAAAAATTATTTAATATTATGCGGAGAGCCAGAAGAATTCATGAAGGGAATTCAACGCACGGACGATTTGAAGCG
TTTTACGACTTTGAGGGCCCGATTGAATCCCGCGAAGATGAATGATGATCGAAATCAGGAAATGAAGATGGAAGGGGAGA
AGCTTGATGAACAAATCGTGCATCTTTCACCGGACGATTGCAATGAACAGCAGACGACAGGCGATACTACTTCCCTTCCT
CCAGTCCTTAATGCGGAAACAGCACCTAAAATCCATCCGATGATAGGGATGGATGGTATCACCCCTTATGATTTTTTGGA
TGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(345-553)

Helix-hairpin-helix containing domain (HHH_RecD2)

(161-249)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-654)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-729)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.169

97.464

0.508

Multiple sequence alignment