Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   M5E02_RS11415 Genome accession   NZ_CP097373
Coordinates   2237015..2237308 (-) Length   97 a.a.
NCBI ID   WP_024422977.1    Uniprot ID   A0A0M2EIN6
Organism   Bacillus safensis strain AHB2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2232015..2242308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E02_RS11365 (M5E02_11365) sinR 2232179..2232514 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  M5E02_RS11370 (M5E02_11370) - 2232582..2233382 (-) 801 WP_024422970.1 biofilm matrix protein TasA -
  M5E02_RS11375 (M5E02_11375) - 2233437..2234009 (-) 573 WP_252056286.1 signal peptidase I SipW -
  M5E02_RS11380 (M5E02_11380) tapA 2234062..2234589 (-) 528 WP_252056287.1 amyloid fiber anchoring/assembly protein TapA -
  M5E02_RS11385 (M5E02_11385) - 2234889..2235167 (+) 279 WP_252058305.1 DUF3889 domain-containing protein -
  M5E02_RS11390 (M5E02_11390) - 2235203..2235400 (-) 198 WP_095409000.1 YqzE family protein -
  M5E02_RS11395 (M5E02_11395) comGG 2235459..2235842 (-) 384 WP_252056288.1 competence type IV pilus minor pilin ComGG -
  M5E02_RS11400 (M5E02_11400) comGF 2235839..2236366 (-) 528 WP_286037361.1 competence type IV pilus minor pilin ComGF -
  M5E02_RS11405 (M5E02_11405) comGE 2236278..2236592 (-) 315 WP_252056290.1 competence type IV pilus minor pilin ComGE -
  M5E02_RS11410 (M5E02_11410) comGD 2236576..2237022 (-) 447 WP_252056291.1 competence type IV pilus minor pilin ComGD -
  M5E02_RS11415 (M5E02_11415) comGC 2237015..2237308 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene
  M5E02_RS11420 (M5E02_11420) comGB 2237325..2238365 (-) 1041 WP_252056292.1 competence type IV pilus assembly protein ComGB -
  M5E02_RS11425 (M5E02_11425) comGA 2238346..2239416 (-) 1071 WP_252058306.1 competence type IV pilus ATPase ComGA Machinery gene
  M5E02_RS11430 (M5E02_11430) - 2239594..2240469 (-) 876 WP_048239208.1 STAS domain-containing protein -
  M5E02_RS11440 (M5E02_11440) - 2240693..2241073 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  M5E02_RS11445 (M5E02_11445) - 2241285..2241527 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10686.62 Da        Isoelectric Point: 7.3218

>NTDB_id=689206 M5E02_RS11415 WP_024422977.1 2237015..2237308(-) (comGC) [Bacillus safensis strain AHB2]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQAIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIVIQNGNVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=689206 M5E02_RS11415 WP_024422977.1 2237015..2237308(-) (comGC) [Bacillus safensis strain AHB2]
ATGAATGATAAAGGATTTACCCTGTTAGAAATGTTAATTGTCATGCTCGTAATATCTATTCTTTTACTCATTACCATTCC
GAATATCACACGTCATCACCAAGCTATTCAGGCAAAGGGCTGTGAAGGGCTCAAATCAATGGTCAGCACACAAGTGATGG
CATATGAATTGGAGCATGATGGGAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGTTATGTCAAAAAGGGGTTAACT
TGTCCTAATGGAAAAGCGATTGTCATTCAAAACGGCAACGTGAAGCATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M2EIN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

42.222

92.784

0.392
  comGC Staphylococcus aureus N315

42.222

92.784

0.392