Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   M5E02_RS11365 Genome accession   NZ_CP097373
Coordinates   2232179..2232514 (+) Length   111 a.a.
NCBI ID   WP_024422969.1    Uniprot ID   -
Organism   Bacillus safensis strain AHB2     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2227179..2237514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E02_RS11340 (M5E02_11340) gcvT 2227657..2228754 (-) 1098 WP_252056282.1 glycine cleavage system aminomethyltransferase GcvT -
  M5E02_RS11345 (M5E02_11345) - 2228781..2228981 (+) 201 WP_252056283.1 hypothetical protein -
  M5E02_RS11350 (M5E02_11350) - 2229316..2230986 (+) 1671 WP_252056284.1 SNF2-related protein -
  M5E02_RS11355 (M5E02_11355) - 2231001..2231798 (+) 798 WP_252056285.1 YqhG family protein -
  M5E02_RS11360 (M5E02_11360) - 2231981..2232145 (+) 165 WP_080967832.1 anti-repressor SinI family protein -
  M5E02_RS11365 (M5E02_11365) sinR 2232179..2232514 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  M5E02_RS11370 (M5E02_11370) - 2232582..2233382 (-) 801 WP_024422970.1 biofilm matrix protein TasA -
  M5E02_RS11375 (M5E02_11375) - 2233437..2234009 (-) 573 WP_252056286.1 signal peptidase I SipW -
  M5E02_RS11380 (M5E02_11380) tapA 2234062..2234589 (-) 528 WP_252056287.1 amyloid fiber anchoring/assembly protein TapA -
  M5E02_RS11385 (M5E02_11385) - 2234889..2235167 (+) 279 WP_252058305.1 DUF3889 domain-containing protein -
  M5E02_RS11390 (M5E02_11390) - 2235203..2235400 (-) 198 WP_095409000.1 YqzE family protein -
  M5E02_RS11395 (M5E02_11395) comGG 2235459..2235842 (-) 384 WP_252056288.1 competence type IV pilus minor pilin ComGG -
  M5E02_RS11400 (M5E02_11400) comGF 2235839..2236366 (-) 528 WP_286037361.1 competence type IV pilus minor pilin ComGF -
  M5E02_RS11405 (M5E02_11405) comGE 2236278..2236592 (-) 315 WP_252056290.1 competence type IV pilus minor pilin ComGE -
  M5E02_RS11410 (M5E02_11410) comGD 2236576..2237022 (-) 447 WP_252056291.1 competence type IV pilus minor pilin ComGD -
  M5E02_RS11415 (M5E02_11415) comGC 2237015..2237308 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12978.56 Da        Isoelectric Point: 5.0026

>NTDB_id=689205 M5E02_RS11365 WP_024422969.1 2232179..2232514(+) (sinR) [Bacillus safensis strain AHB2]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=689205 M5E02_RS11365 WP_024422969.1 2232179..2232514(+) (sinR) [Bacillus safensis strain AHB2]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946