Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   M6D84_RS26990 Genome accession   NZ_CP097351
Coordinates   5308766..5309278 (-) Length   170 a.a.
NCBI ID   WP_000981966.1    Uniprot ID   A0A0A3WKS9
Organism   Bacillus cereus strain DQ01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5303766..5314278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M6D84_RS26970 (M6D84_26970) rplI 5304981..5305427 (-) 447 WP_000864228.1 50S ribosomal protein L9 -
  M6D84_RS26975 (M6D84_26975) - 5305424..5307397 (-) 1974 WP_001113785.1 DHH family phosphoesterase -
  M6D84_RS26980 (M6D84_26980) - 5307476..5308407 (-) 932 Protein_5268 YybS family protein -
  M6D84_RS26985 (M6D84_26985) rpsR 5308487..5308720 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  M6D84_RS26990 (M6D84_26990) ssbA 5308766..5309278 (-) 513 WP_000981966.1 single-stranded DNA-binding protein Machinery gene
  M6D84_RS26995 (M6D84_26995) rpsF 5309305..5309595 (-) 291 WP_001233778.1 30S ribosomal protein S6 -
  M6D84_RS27000 (M6D84_27000) ychF 5309787..5310887 (-) 1101 WP_000524657.1 redox-regulated ATPase YchF -
  M6D84_RS27005 (M6D84_27005) - 5311003..5311200 (-) 198 WP_000435485.1 DUF951 domain-containing protein -
  M6D84_RS27010 (M6D84_27010) - 5311221..5312102 (-) 882 WP_000364814.1 mechanosensitive ion channel family protein -
  M6D84_RS27015 (M6D84_27015) yyaC 5312362..5312958 (+) 597 WP_001020714.1 spore protease YyaC -
  M6D84_RS27020 (M6D84_27020) spo0J 5312979..5313830 (-) 852 WP_001051832.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18494.29 Da        Isoelectric Point: 4.9327

>NTDB_id=688960 M6D84_RS26990 WP_000981966.1 5308766..5309278(-) (ssbA) [Bacillus cereus strain DQ01]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNSGFTKNDDPFSNVGQP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=688960 M6D84_RS26990 WP_000981966.1 5308766..5309278(-) (ssbA) [Bacillus cereus strain DQ01]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTCGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCCAATCAGCAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATACGTAACAGAAGTTCTTGCGGAAAGCGTGCAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTAGGTCAACCG
ATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A3WKS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.571

100

0.747
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

37.43

100

0.394