Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M6D76_RS18530 Genome accession   NZ_CP097341
Coordinates   4062948..4063463 (-) Length   171 a.a.
NCBI ID   WP_060185521.1    Uniprot ID   -
Organism   Alcaligenes faecalis strain DY-8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4057948..4068463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M6D76_RS18515 (M6D76_18500) - 4058749..4059249 (+) 501 WP_083055026.1 sigma-70 family RNA polymerase sigma factor -
  M6D76_RS18520 (M6D76_18505) - 4059270..4060211 (+) 942 WP_035269623.1 FecR domain-containing protein -
  M6D76_RS18525 (M6D76_18510) - 4060291..4062762 (+) 2472 WP_239054890.1 TonB-dependent receptor -
  M6D76_RS18530 (M6D76_18515) ssb 4062948..4063463 (-) 516 WP_060185521.1 single-stranded DNA-binding protein Machinery gene
  M6D76_RS18535 (M6D76_18520) - 4063724..4064935 (-) 1212 WP_257112692.1 MFS transporter -
  M6D76_RS18540 (M6D76_18525) uvrA 4065047..4068010 (+) 2964 WP_257113680.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18745.76 Da        Isoelectric Point: 5.3412

>NTDB_id=688808 M6D76_RS18530 WP_060185521.1 4062948..4063463(-) (ssb) [Alcaligenes faecalis strain DY-8]
MASVNKVILVGNLGRDPEVRYSAEGSAICNISIATTSQWKDRTSGERREETEWHRVVFYNRLAEIAGEYLRKGRPVYVEG
RLRTRKWTGQDGQERFTTEIIAEQMQMLGGRDGGDMGGGSMGGGEYGGGGGGAPAPQRAQRPAPQQQQQQAPRNNAPMSD
NLADMDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=688808 M6D76_RS18530 WP_060185521.1 4062948..4063463(-) (ssb) [Alcaligenes faecalis strain DY-8]
ATGGCATCGGTAAATAAAGTCATTCTGGTCGGCAATCTTGGCCGCGACCCAGAAGTACGCTACAGCGCAGAAGGCTCGGC
TATCTGCAATATTTCCATTGCCACGACTTCGCAGTGGAAAGACCGTACCTCTGGCGAGCGCCGCGAGGAAACCGAATGGC
ACCGGGTGGTGTTCTACAACCGTTTGGCTGAAATTGCAGGTGAGTACCTGCGTAAAGGCCGTCCCGTCTACGTAGAAGGT
CGTCTGCGCACCCGTAAATGGACAGGTCAGGACGGTCAGGAGCGTTTCACGACCGAAATCATTGCCGAGCAAATGCAAAT
GCTGGGTGGTCGTGATGGTGGTGATATGGGCGGCGGCAGCATGGGTGGTGGCGAATACGGTGGCGGCGGTGGTGGTGCAC
CAGCTCCGCAACGTGCTCAGCGTCCAGCGCCTCAGCAACAGCAACAACAGGCTCCACGTAATAACGCTCCTATGTCGGAC
AATCTGGCCGATATGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.053

100

0.567
  ssb Glaesserella parasuis strain SC1401

47.917

100

0.538
  ssb Neisseria meningitidis MC58

47.802

100

0.509
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.509